Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n24
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99278-2|CAB16491.1|  277|Caenorhabditis elegans Hypothetical pr...    98   3e-21
Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    27   6.7  
AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated...    27   8.9  

>Z99278-2|CAB16491.1|  277|Caenorhabditis elegans Hypothetical
           protein Y53C12B.2 protein.
          Length = 277

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 47/74 (63%), Positives = 56/74 (75%)
 Frame = +3

Query: 327 RKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPQXKDIANLQKAAD 506
           R V VP HRYTPLK++W+ IFTPIV++L LQVRFN K R VEI+     +D  +LQKA D
Sbjct: 100 RVVPVPKHRYTPLKDNWVNIFTPIVKNLGLQVRFNLKKRQVEIRNPVDREDTTDLQKATD 159

Query: 507 FVXAFIYGFEVDDA 548
           FV AFI GFEV+DA
Sbjct: 160 FVRAFILGFEVNDA 173


>Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical
           protein F18A11.2 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 300 DPNESKVAMRKVAVPAHRYTPLKESWLK 383
           +  + KV++  ++VPA +YT  K SW K
Sbjct: 262 EKEKEKVSLLAISVPAGKYTVQKFSWKK 289


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 245  PNCGLFNLHTISGVICSXALYIFKL-HR 165
            PNC  F +HT+SG +   A ++ KL HR
Sbjct: 1624 PNCTFFEVHTLSGAV-HLATWLTKLKHR 1650


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 245  PNCGLFNLHTISGVICSXALYIFKL-HR 165
            PNC  F +HT+SG +   A ++ KL HR
Sbjct: 1624 PNCTFFEVHTLSGAV-HLATWLTKLKHR 1650


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 245  PNCGLFNLHTISGVICSXALYIFKL-HR 165
            PNC  F +HT+SG +   A ++ KL HR
Sbjct: 1624 PNCTFFEVHTLSGAV-HLATWLTKLKHR 1650


>AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated
           ion channel protein 1 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 293 FFMFFSVPXRLLWIAFPNCGLFNLHTISGVICSXALYIFKLHR 165
           FF     P R  WI +     F   T+S VIC   +Y F L R
Sbjct: 125 FFESDDAP-RTAWINYNGTTGFYTSTVSSVICQLDVYKFPLDR 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,264,802
Number of Sequences: 27780
Number of extensions: 211702
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)