Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n23
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    28   0.30 
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    27   0.69 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   0.91 
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   3.7  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    24   4.8  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    24   4.8  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    24   4.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   4.8  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    24   6.4  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    24   6.4  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    24   6.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    23   8.5  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    23   8.5  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    23   8.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    23   8.5  

>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 133 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
           EY+P SI G+K  K  +  K+   IKN +  T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 136 YVPTS--ISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 270
           Y PT   +  +K   N+V +K+ S   + +NT A PT   + +N +D
Sbjct: 60  YRPTKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPTKHSLDENEKD 106


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +1

Query: 130 TEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT------AAPTLLMVSDNTQDTNMSE*I 291
           T  VP++ SG KK ++S  A +    KN+ N        A P LL+  +N   ++ SE +
Sbjct: 646 TPAVPSAKSGLKKDQSSEVANKDVVSKNKDNIAILADREARPQLLLDDNNDSSSSSSEHL 705

Query: 292 KNF 300
            +F
Sbjct: 706 ISF 708


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 124 STTEYVPTSISGSKKRK 174
           S++ +VP  +S SKKRK
Sbjct: 71  SSSHFVPNGVSNSKKRK 87


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 121 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDT 273
           P+T+     SIS +K    S      + +K+  +T AAP L   S + + T
Sbjct: 85  PTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSPSHSYEPT 135


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 76  NMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRS 201
           N   F   ALK P     T+    S + S K K +VP +Q+S
Sbjct: 522 NFGIFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKS 563


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 115 VAPSTTEYVPTSISGSKKRKNSVPAKQRSS 204
           + P TT   PTSIS S    N++     SS
Sbjct: 68  ITPGTTTIYPTSISTSGVSSNNIDETSVSS 97


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 137 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS 42
           YSV++ +T   S+TVLN +  +   S +N+S+
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSST 622


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 118 APSTTEYVPTSISGSKKRKNSVPAKQ-RSSIKNRRNTTA 231
           AP  +  VPT  +G     +SVP +   S++K +   +A
Sbjct: 490 APQPSSNVPTKFTGGASESSSVPPRPIPSAMKGKAPASA 528


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 70  TKNMAKFKTVALKLPVAPST----TEYVPTSISGSKKRKNSVPAKQRSSIKNRRN 222
           +KN  K  TV++   +   T     E V +  S  +KR  + P+K++  ++ R+N
Sbjct: 41  SKNTTKKSTVSVVNFLEQDTDFGANEVVGSDNSSPEKRSENSPSKRKDILEQRKN 95


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +1

Query: 121 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRR-----NTTAAPTL 243
           P   EY  T  S +   KNS  A +   +K+R      N+ AA TL
Sbjct: 169 PKRAEYTLTDPSKTSDTKNSTEADEDIEMKSREVSPASNSVAATTL 214


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 94  TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 243
           ++A + P+ P T  + P+  + S  +KN     +R S + ++N ++  TL
Sbjct: 570 SLARRKPL-PDTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTL 618


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 113 PLHRLLQNTCPLRLAAARKEKTQFRPNNDL 202
           PLH  L++ C L  AA    K  FR  N L
Sbjct: 213 PLHEQLESRCALHTAA----KDPFRSKNSL 238


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 296 FFIYSDIFVSCVLSLTIKSVGAAVVLRRFFI 204
           F ++ D   +C L+L  KS+     LR FF+
Sbjct: 752 FHLFDDKEHACSLTLIFKSIWKVKKLRWFFL 782


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 170 LFLLPLIEVGTYSVVDGATGNLSATVLNLAIFLVM 66
           LFL+  +    ++V+    GN+S+TVL L+ + ++
Sbjct: 52  LFLIIWLIGDFFNVLGSIYGNVSSTVLVLSFYYIV 86


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +1

Query: 4   FNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGSK 165
           FNNN+  L   +     + D + ++++K       L  +P+   YV   +SG++
Sbjct: 553 FNNNLRKLHEKLQSLFASYDKLQEDLSKRLGKKATLRKSPAKLYYVHLKLSGNE 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.127    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,649
Number of Sequences: 5004
Number of extensions: 23449
Number of successful extensions: 102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)