Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21n23
(318 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ181928-1|ABA19229.1| 540|Homo sapiens CARDIF protein. 30 1.3
DQ174270-1|AAZ80417.1| 540|Homo sapiens mitochondrial anti-vira... 30 1.3
DQ167126-1|ABA54890.1| 540|Homo sapiens virus-induced signaling... 30 1.3
BC044952-1|AAH44952.1| 540|Homo sapiens virus-induced signaling... 30 1.3
AL353194-3|CAI11041.1| 540|Homo sapiens novel protein protein. 30 1.3
AL109804-18|CAI18851.1| 540|Homo sapiens novel protein protein. 30 1.3
AB232371-1|BAE79738.1| 540|Homo sapiens Ips-1 protein. 30 1.3
AB097003-1|BAC77356.1| 540|Homo sapiens putative NFkB activatin... 30 1.3
AB033097-1|BAA86585.1| 542|Homo sapiens KIAA1271 protein protein. 30 1.3
CR788268-5|CAI95050.1| 1288|Homo sapiens contactin associated pr... 29 2.3
CR788268-2|CAI95046.1| 1175|Homo sapiens contactin associated pr... 29 2.3
BX664735-4|CAI16326.1| 1288|Homo sapiens contactin associated pr... 29 2.3
BX664735-1|CAI16324.1| 1175|Homo sapiens contactin associated pr... 29 2.3
BX649569-4|CAI12628.1| 1288|Homo sapiens contactin associated pr... 29 2.3
BX649569-1|CAI12626.1| 1175|Homo sapiens contactin associated pr... 29 2.3
BC132737-1|AAI32738.1| 1207|Homo sapiens CNTNAP3 protein protein. 29 3.0
BC117358-1|AAI17359.1| 397|Homo sapiens GATA binding protein 5 ... 29 3.0
BC117356-1|AAI17357.1| 397|Homo sapiens GATA binding protein 5 ... 29 3.0
BC047790-1|AAH47790.1| 417|Homo sapiens GATA5 protein protein. 29 3.0
AL953854-4|CAI95010.1| 128|Homo sapiens novel protein similar t... 29 3.0
AL953854-3|CAI95008.1| 289|Homo sapiens novel protein similar t... 29 3.0
AL499627-1|CAC36001.1| 397|Homo sapiens GATA binding protein 5 ... 29 3.0
AL353729-6|CAH72042.1| 1039|Homo sapiens contactin associated pr... 29 3.0
AL353729-3|CAH72039.1| 1288|Homo sapiens contactin associated pr... 29 3.0
AL162501-4|CAH70490.1| 1039|Homo sapiens contactin associated pr... 29 3.0
AL162501-2|CAH70488.1| 1288|Homo sapiens contactin associated pr... 29 3.0
AF333769-1|AAG52889.2| 1288|Homo sapiens cell recognition molecu... 29 3.0
AB051501-1|BAB21805.2| 1175|Homo sapiens KIAA1714 protein protein. 29 3.0
U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar traffi... 28 6.9
U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome... 28 6.9
U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein. 28 6.9
U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein. 28 6.9
BC033093-1|AAH33093.1| 958|Homo sapiens Treacher Collins-France... 28 6.9
BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein. 28 6.9
BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for IM... 28 6.9
BC014559-1|AAH14559.1| 958|Homo sapiens Treacher Collins-France... 28 6.9
BC011764-1|AAH11764.1| 958|Homo sapiens Treacher Collins-France... 28 6.9
AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform p... 28 6.9
AB209317-1|BAD92554.1| 712|Homo sapiens TCOF1 protein variant p... 28 6.9
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 27 9.1
BC041366-1|AAH41366.1| 362|Homo sapiens USP2 protein protein. 27 9.1
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 27 9.1
AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein. 27 9.1
>DQ181928-1|ABA19229.1| 540|Homo sapiens CARDIF protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>DQ174270-1|AAZ80417.1| 540|Homo sapiens mitochondrial anti-viral
signaling protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>DQ167126-1|ABA54890.1| 540|Homo sapiens virus-induced signaling
adapter protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>BC044952-1|AAH44952.1| 540|Homo sapiens virus-induced signaling
adapter protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AL353194-3|CAI11041.1| 540|Homo sapiens novel protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AL109804-18|CAI18851.1| 540|Homo sapiens novel protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AB232371-1|BAE79738.1| 540|Homo sapiens Ips-1 protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AB097003-1|BAC77356.1| 540|Homo sapiens putative NFkB activating
protein protein.
Length = 540
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338
>AB033097-1|BAA86585.1| 542|Homo sapiens KIAA1271 protein protein.
Length = 542
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 94 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 189
TVALK+P P++ VP+ + S K +VP+
Sbjct: 309 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 340
>CR788268-5|CAI95050.1| 1288|Homo sapiens contactin associated
protein-like 3B protein.
Length = 1288
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS+Y +V LTR+ IT + ++ +L L V+ EY+ ++ +
Sbjct: 1019 TLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANN 1073
>CR788268-2|CAI95046.1| 1175|Homo sapiens contactin associated
protein-like 3B protein.
Length = 1175
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS+Y +V LTR+ IT + ++ +L L V+ EY+ ++ +
Sbjct: 1067 TLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANN 1121
>BX664735-4|CAI16326.1| 1288|Homo sapiens contactin associated
protein-like 3B protein.
Length = 1288
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS+Y +V LTR+ IT + ++ +L L V+ EY+ ++ +
Sbjct: 1019 TLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANN 1073
>BX664735-1|CAI16324.1| 1175|Homo sapiens contactin associated
protein-like 3B protein.
Length = 1175
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS+Y +V LTR+ IT + ++ +L L V+ EY+ ++ +
Sbjct: 1067 TLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANN 1121
>BX649569-4|CAI12628.1| 1288|Homo sapiens contactin associated
protein-like 3B protein.
Length = 1288
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS+Y +V LTR+ IT + ++ +L L V+ EY+ ++ +
Sbjct: 1019 TLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANN 1073
>BX649569-1|CAI12626.1| 1175|Homo sapiens contactin associated
protein-like 3B protein.
Length = 1175
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS+Y +V LTR+ IT + ++ +L L V+ EY+ ++ +
Sbjct: 1067 TLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYVSSFYEEYLSVILANN 1121
>BC132737-1|AAI32738.1| 1207|Homo sapiens CNTNAP3 protein protein.
Length = 1207
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 938 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 992
>BC117358-1|AAI17359.1| 397|Homo sapiens GATA binding protein 5
protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 103 LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTNMS 282
+KL P SI ++KRK AK R S + RN +A+P+ + +D++ T+ +
Sbjct: 271 MKLHGVPRPLAMKKESIQ-TRKRKPKTIAKARGSSGSTRNASASPSAVASTDSSAATSKA 329
Query: 283 E 285
+
Sbjct: 330 K 330
>BC117356-1|AAI17357.1| 397|Homo sapiens GATA binding protein 5
protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 103 LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTNMS 282
+KL P SI ++KRK AK R S + RN +A+P+ + +D++ T+ +
Sbjct: 271 MKLHGVPRPLAMKKESIQ-TRKRKPKTIAKARGSSGSTRNASASPSAVASTDSSAATSKA 329
Query: 283 E 285
+
Sbjct: 330 K 330
>BC047790-1|AAH47790.1| 417|Homo sapiens GATA5 protein protein.
Length = 417
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 103 LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTNMS 282
+KL P SI ++KRK AK R S + RN +A+P+ + +D++ T+ +
Sbjct: 291 MKLHGVPRPLAMKKESIQ-TRKRKPKTIAKARGSSGSTRNASASPSAVASTDSSAATSKA 349
Query: 283 E 285
+
Sbjct: 350 K 350
>AL953854-4|CAI95010.1| 128|Homo sapiens novel protein similar to
contactin associated protein-like 3 (CNTNAP3) protein.
Length = 128
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 20 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 74
>AL953854-3|CAI95008.1| 289|Homo sapiens novel protein similar to
contactin associated protein-like 3 (CNTNAP3) protein.
Length = 289
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 20 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 74
>AL499627-1|CAC36001.1| 397|Homo sapiens GATA binding protein 5
protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 103 LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTNMS 282
+KL P SI ++KRK AK R S + RN +A+P+ + +D++ T+ +
Sbjct: 271 MKLHGVPRPLAMKKESIQ-TRKRKPKTIAKARGSSGSTRNASASPSAVASTDSSAATSKA 329
Query: 283 E 285
+
Sbjct: 330 K 330
>AL353729-6|CAH72042.1| 1039|Homo sapiens contactin associated
protein-like 3 protein.
Length = 1039
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 931 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 985
>AL353729-3|CAH72039.1| 1288|Homo sapiens contactin associated
protein-like 3 protein.
Length = 1288
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 1019 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 1073
>AL162501-4|CAH70490.1| 1039|Homo sapiens contactin associated
protein-like 3 protein.
Length = 1039
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 931 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 985
>AL162501-2|CAH70488.1| 1288|Homo sapiens contactin associated
protein-like 3 protein.
Length = 1288
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 1019 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 1073
>AF333769-1|AAG52889.2| 1288|Homo sapiens cell recognition molecule
CASPR3 protein.
Length = 1288
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 1019 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 1073
>AB051501-1|BAB21805.2| 1175|Homo sapiens KIAA1714 protein protein.
Length = 1175
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGS 162
T + N + L+SS++ +V LTR+ IT + +T +L L V+ EY+ ++ +
Sbjct: 1067 TLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANN 1121
>U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar
trafficking phosphoprotein protein.
Length = 1411
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 708 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 761
>U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome
protein.
Length = 1411
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 708 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 761
>U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 708 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 761
>U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 708 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 761
>BC033093-1|AAH33093.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 785 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 838
>BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein.
Length = 1126
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 693 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 746
>BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for
IMAGE:3921754) protein.
Length = 1414
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 785 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 838
>BC014559-1|AAH14559.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 785 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 838
>BC011764-1|AAH11764.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 785 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 838
>AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform
protein.
Length = 1488
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 785 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 838
>AB209317-1|BAD92554.1| 712|Homo sapiens TCOF1 protein variant
protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 67 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 228
+ K AK A + P A T ++ + + K P+K + ++N +N+T
Sbjct: 385 VKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQAKQRSPSKVKPPVRNPQNST 438
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +1
Query: 118 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTN 276
+PS++ P+S S S +S P+ + SS + ++T++P+ S ++ ++
Sbjct: 178 SPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSSTSSPSTSSPSSSSPSSS 230
>BC041366-1|AAH41366.1| 362|Homo sapiens USP2 protein protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 160 SKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 270
SKKR+NS A+ + ++N NT ++L NT++
Sbjct: 11 SKKRQNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRE 47
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +1
Query: 118 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDTN 276
+PS++ P+S S S +S P+ + SS + ++T++P+ S ++ ++
Sbjct: 179 SPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSSTSSPSTSSPSSSSPSSS 231
>AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein.
Length = 708
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 127 TTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 237
++ Y P+ + KK+ + ++RS K RR+++++P
Sbjct: 220 SSSYSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSP 256
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.127 0.346
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,547,927
Number of Sequences: 237096
Number of extensions: 764188
Number of successful extensions: 6087
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 6054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6085
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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