Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n23
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   1.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   8.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 96  GSAQVARCTVYYRIRAHFD*RQ-QEKKKLSSGQTTIFYKKSPQHYCGSNTFN 248
           GS      T Y+RI       +  E K  ++G  T+  K     YCG+ T N
Sbjct: 67  GSKCTWTITSYHRINLKCSLVEFSENKNCNAGSLTV-KKNFANKYCGNITLN 117


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 120 CNGQLERYRLKFSHIFSDEIAR*HFVVNATQQRRNIV 10
           C  Q+  + LK S +           +N+T  +RN+V
Sbjct: 150 CPSQIVVFDLKNSKLLKQVKIPHDIAINSTTGKRNVV 186


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 201 FYKKSPQHYCGS 236
           FYK+ PQ  C +
Sbjct: 580 FYKRRPQRACST 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.127    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,638
Number of Sequences: 438
Number of extensions: 1409
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)