Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21n22
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 84 1e-17
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 45 6e-06
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 43 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 43 2e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 42 3e-05
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 42 4e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 9e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 4e-04
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 39 4e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 39 4e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 5e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 5e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 8e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.001
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.003
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.003
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.006
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.010
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.014
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.014
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.014
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.032
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 31 0.055
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.096
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.17
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 0.51
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 0.68
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 1.2
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 27 1.2
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.6
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.6
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 2.1
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 3.6
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 3.6
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 4.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 4.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 4.8
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 25 6.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.3
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 24 8.4
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 24 8.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 8.4
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 83.8 bits (198), Expect = 1e-17
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGK 331
M +R++VG +P D+ FFKG+G+I D + NG+GFVE ED RDA D V + GK
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGK 60
Query: 332 ELLGERVVVEPARG 373
E +G R+VVEPARG
Sbjct: 61 EFMGSRIVVEPARG 74
Score = 28.7 bits (61), Expect = 0.39
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGR--IRDILIKN-GYGFVEFEDYRDADDAVYE 319
+ G R+ V L V +DL+ + G D +N G G VEF D +A+
Sbjct: 94 RRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTS 153
Query: 320 LNGKELLGERVVV 358
LNG+ + G+ V +
Sbjct: 154 LNGEVIKGQAVTL 166
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 44.8 bits (101), Expect = 6e-06
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGR-IR-DILI-----KNGYGFVEFEDYRDADDAVYELN 325
+YV G G+R R+L F+ FG IR DI I + FVE+ED RDA+DA YE++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 326 GKEL 337
G+ L
Sbjct: 69 GRRL 72
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.7 bits (96), Expect = 2e-05
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNG 328
+ + V+VGGL + E+DL+ F+ FGRI +I I G GFV++ + A+ A+ + G
Sbjct: 295 LNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQG 354
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 42.7 bits (96), Expect = 2e-05
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI------------LIKNGYGFVEFEDYRDADD 307
RV+VG L ++ ++ F+ G +R + L+ +G FV F + D D
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 308 AVYELNGKELLGERVVVEPARGI 376
A+ LNGK L +VV+ AR +
Sbjct: 105 AIETLNGKTLDDREIVVQKARPV 127
Score = 31.5 bits (68), Expect = 0.055
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 367
G+GFV F + D A+ E+NGK++ +VV+ A
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 42.3 bits (95), Expect = 3e-05
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKE 334
S V+VGGL V E +L+ F+ FG I + I G GFV+F + + A+ A+ +L G
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362
Query: 335 LLGERV 352
L R+
Sbjct: 363 LGNSRI 368
Score = 31.1 bits (67), Expect = 0.073
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVV 355
+ GYGFV F D D A+ E+ G ++ G+R +
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQG-QICGDRPI 258
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 41.9 bits (94), Expect = 4e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI------KNGYGFVEFEDYRDADDAVYE 319
G +YV + F V E+D+E FF+ +G++ + I G+G+V +DA++A+
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL-S 814
Query: 320 LNGKELLGERVV 355
GK+ LG RV+
Sbjct: 815 AAGKQ-LGNRVL 825
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 9e-05
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYE 319
+ VY+ L + E++ F FG I + L+K+ G+GFV + ++ A AV E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 320 LNGKELLGERVVVEPAR 370
LN KE G+++ V A+
Sbjct: 321 LNDKEYKGKKLYVGRAQ 337
Score = 34.3 bits (75), Expect = 0.008
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK-------NGYGFVEFEDYRDADD 307
KM V++ L + + L F FG+I + GYGFV F+ A+
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANA 223
Query: 308 AVYELNGKELLGERVVV 358
A+ +NG L ++V V
Sbjct: 224 AIEHVNGMLLNDKKVYV 240
Score = 30.3 bits (65), Expect = 0.13
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 307
K G +++ L V + L+ F FG I I G+GFV + +A+
Sbjct: 360 KYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANK 419
Query: 308 AVYELNGKELLGERVVVEPAR 370
AV E+N + L G+ + V A+
Sbjct: 420 AVTEMNQRMLAGKPLYVALAQ 440
Score = 29.1 bits (62), Expect = 0.29
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 322
+YVG L V E L + F G + RD + + GY +V F + D + A+ EL
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 323 N 325
N
Sbjct: 142 N 142
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.5 bits (88), Expect = 2e-04
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
G+ V+VG +P+ V E+ + + F G ++ + GYGF EF D AV
Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65
Query: 314 YELNGKELLGERVVVE 361
+LN EL ++ VE
Sbjct: 66 RKLNNSELGPRKIRVE 81
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.7 bits (86), Expect = 4e-04
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
S ++V L F ++ DL FF G I+ ++ GYGFV F DA A
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 317 ELNGKELLG 343
EL K+L G
Sbjct: 65 ELKNKKLHG 73
Score = 26.2 bits (55), Expect = 2.1
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVV 355
G+GF++F ++ A A+ LNG+E+ ++++
Sbjct: 540 GFGFMQFISHKYALMALRWLNGREITVKKII 570
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 38.7 bits (86), Expect = 4e-04
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 346
VYV LP + ++L +F FG I + N G + F A+ A+ E+N L G
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLHGV 237
Query: 347 RVVVEPAR 370
R+ + AR
Sbjct: 238 RIQLSWAR 245
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 38.7 bits (86), Expect = 4e-04
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 161 SRVYVGGLPF-GVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
SR+++G L + +R+L K FK +G + I++K YGFV+F D A+ G +
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 338 LGERVVVE 361
G+++ +E
Sbjct: 423 RGQKLHLE 430
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 5e-04
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
+++ L + +E D+E+ F +G I I +++N GY FV FE RD A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 323 NGKELLGERVVVEPARG 373
G L G R+VV+ RG
Sbjct: 162 AGLMLNGRRIVVDVERG 178
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 38.3 bits (85), Expect = 5e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNGYGFVEFEDYRDADDAVYELN 325
V++G LP E+++E+ F FG+I IL K FV F + RDA V L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.5 bits (83), Expect = 8e-04
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
++Y+ LP + E + + K FG + LIKN G+ F EF++ DA+ A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 320 LNGKELLGERV 352
L+GK+ G ++
Sbjct: 371 LDGKDTYGNKL 381
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.001
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
+YVG LP+ +R+L F G + I G+G V+FE+ DA ++ +LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 326 G 328
G
Sbjct: 342 G 342
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 36.7 bits (81), Expect = 0.001
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKN-GYGFVEFEDYRDADD 307
++G+ ++VG L V ER L F G++ RD ++ GYGFV ++ + AD
Sbjct: 96 LIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADA 155
Query: 308 AVYELNGKELLGERVVVEPA 367
A+ +N + L+ + + V A
Sbjct: 156 AIEAMNNQFLMNKPITVSYA 175
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.9 bits (79), Expect = 0.003
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG---------YGFVEFEDYRDADD 307
+YVG LP + DL + F+ FG + KN + F+ FE+ AD+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 308 AVYELNGKELLGERVVVEPARGIDR 382
A+ LNG G + VE ++R
Sbjct: 82 AIASLNGSSFQGNTLKVEYTHIVER 106
Score = 30.7 bits (66), Expect = 0.096
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Frame = +2
Query: 203 RDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAVYELNG 328
+ LE+ F FGRI+ I GYGFV F +A A+ LNG
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 231 KPLKNFSKSLSLTPKGRPPTYTRDPTIFQ*TIINYDSK 118
+P NFSK L+ K T ++ PT+F I +++K
Sbjct: 41 EPFGNFSKFHMLSRKKNKSTDSKSPTLF--AFITFENK 76
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.5 bits (78), Expect = 0.003
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYE 319
R+++ L + E DL+ F FG++ + + G+ +++F D DA A E
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 320 LNGKELLGERVVVEPAR 370
L+ K G + V PA+
Sbjct: 384 LDAKPFQGRLLHVLPAK 400
Score = 33.5 bits (73), Expect = 0.014
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 14/85 (16%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGF-GRIRDIL------------IKNGYGFVEFEDYRDADD 307
+YV L F ++ + +K FK G + ++ + G+GFVEF+D A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 308 AVYELNGKELLGERVVVEPA-RGID 379
A++ +NG L G ++ ++ + +G+D
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQGVD 705
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.7 bits (76), Expect = 0.006
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
VYVG +P+ + E + FK G ++ + GYGF E+ D A AV L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 323 NGKELLGERVVVE 361
N + R+ V+
Sbjct: 67 NNYDAGTRRLRVD 79
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.010
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
+Y+G L F + E D+ F FG DI L+++ G+ F+++ED R AV +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 323 NGKELLGERVVVE 361
+LL V V+
Sbjct: 93 TNVKLLDRLVRVD 105
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.014
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
V+V L + R+L FF+ G +RD I G +VEF + D+ A L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIAL 300
Query: 323 NGKELLGERVVVE 361
+GK LLG V+V+
Sbjct: 301 SGKRLLGLPVIVQ 313
Score = 32.7 bits (71), Expect = 0.024
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYEL 322
R+ V + F + + D++ F+ FG I + ++ G+G++++ + A +A+ ++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 323 NGKELLGERVVV 358
NG +L G + V
Sbjct: 401 NGFDLAGRNMRV 412
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.5 bits (73), Expect = 0.014
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFED 289
++++VGG+P E + FF FGR+ D + G+GFV +E+
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Score = 31.9 bits (69), Expect = 0.042
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
++++GGL + + L +F+ FG + D + G+GF+ F++ + V E
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK----CVNE 219
Query: 320 LNGKELLGERVVVEPARGIDR 382
+ KE + +++P R I R
Sbjct: 220 VMSKEHHLDGKIIDPKRAIPR 240
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.014
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKNGYGFVEFEDYRDADDAVYELN 325
V+VG L V E L F FG I ++ + Y FVEF++ DA +A+ +N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 326 GKELLGERVVVEPA 367
L + V PA
Sbjct: 68 YSILCDRCIRVSPA 81
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.032
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN 262
R+YVGGL + DLE F FG + ++ I N
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIIN 38
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 31.5 bits (68), Expect = 0.055
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 221 FKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
F GF +R + + G FVE++ R+A A G L G ++ V AR
Sbjct: 197 FSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFAR 246
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.096
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY--GFVE 280
K+ +++GG+ VRE L F+ FG ++ +++ + Y GF++
Sbjct: 402 KVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK 447
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.17
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYEL 322
+YVG LP G E+ + +F FG + + + K G Y F+EFE D + V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESL-DVANVVAET 165
Query: 323 NGKELL 340
LL
Sbjct: 166 MHNYLL 171
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 28.3 bits (60), Expect = 0.51
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN------GYGFVEFEDYRDADDAVYEL 322
+ +Y+ LP E D+ FK I + ++++ G GF +D + A+D + +
Sbjct: 384 TNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKF 443
Query: 323 N 325
N
Sbjct: 444 N 444
Score = 24.6 bits (51), Expect = 6.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDA 301
VY+ GLP + +L + FG++ + + GYGF FE+ + A
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA 350
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 0.68
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
V+VG L + V ++ L + F+ +G I + GYG+V+FE A AV
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 323 NGKELLGERV 352
KE+ G V
Sbjct: 325 GTKEIDGRMV 334
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVV 358
G F +FE+ AD V EL+GK++L V
Sbjct: 92 GLVFADFENVDGADLCVQELDGKQILKNHTFV 123
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 313 HSIICISVIFKFNKTISILDKYVSDSS 233
H+II I +F++ K + KYV+D++
Sbjct: 159 HAIISIGYMFRYLKIVQAAKKYVADNN 185
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI--LIKNGYGFVEFEDYRDA 301
+YV LP G + F +G ++DI L + V +E A
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSA 48
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 1.6
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = +2
Query: 137 IVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGR------IRDILIKN-GYGFVEFEDYR 295
++ W R++VG L V + L + F + +RD K G+GFV F+D
Sbjct: 22 LLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSD 81
Query: 296 DADDAVYELNGKELLGERVV 355
A E NGK +G R V
Sbjct: 82 QFLKAWREKNGK-YIGSRPV 100
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
++ Y FV+F++ DA A+ E L G + +E A+
Sbjct: 119 LQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAK 157
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI 241
++ VY+ GLP V ++E+ FK G I
Sbjct: 107 VINKAVYIQGLPLDVTVDEIEEVFKKCGVI 136
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 3.6
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +2
Query: 197 RERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYELNGKELLGERV 352
++ DLE F FG+I + + G Y F+EF++ + A +++ + R+
Sbjct: 256 QDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRI 315
Query: 353 VVEPARGIDR 382
V+ ++ + R
Sbjct: 316 HVDFSQSVAR 325
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 4.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 319 LVHSIICISVIFKFNKTIS--ILDKYVSDSSKTFEELF 212
L+ + S+ F K +S I+DKY+ +S++ E+F
Sbjct: 181 LLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMF 218
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 358
I GYGFV F A A LNG + +R+ V
Sbjct: 423 ISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 4.8
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 150 KWLDHECMLVVSPLE*ERETWKSSSKVLEESETYLSRMDMV--LLNLKITEMQMM 308
KW +L +SPL E + SSK+ ++ + ++ V + NL I E +++
Sbjct: 392 KWTSQLGVLYLSPLVGEELASQISSKIYDDLHAFYKSLNSVDGISNLTIEEEELV 446
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 6.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 188 FGVRERDLEKFFKGFGRIRDILIKNGYGF 274
FG E + ++FK GR ++I + +G+
Sbjct: 58 FGANEECIGRWFKQTGRRKEIFLATKFGY 86
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 6.3
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 157 WITSVCWWSPLWSKRERLGKVLQRF---WKNQRHTYQEWIWFC 276
WI S+C +S + K E L + R KN QE I C
Sbjct: 3310 WIKSICNYSKVLEKLEPLNSEVDRLKLEQKNAEECIQETIAAC 3352
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 8.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 283 KFNKTISILDKYVSDSSKTFEELFQVSLSYSKGETTNIHS*SNHFPINNNK 131
+F K ISIL+K D + EEL S+ + T + + S + I ++
Sbjct: 110 QFEKRISILEKEKEDLQRKMEELTVESMEVVR-LTRQVETLSTQYSIQRSQ 159
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 24.2 bits (50), Expect = 8.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 232 WKNQRHTYQEWIWFC 276
W + HT+Q+W+ +C
Sbjct: 221 WNLRAHTHQDWLRWC 235
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.2 bits (50), Expect = 8.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 184 PLW-SKRERLGKVLQRFWKNQRHTYQE 261
P W S ++R K+L++FW + TY E
Sbjct: 921 PYWGSTKDR--KILRKFWCRKNMTYDE 945
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,610
Number of Sequences: 5004
Number of extensions: 31682
Number of successful extensions: 170
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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