Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n22
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   0.80 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   0.80 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.5  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 331 FSI*LVHSIICISVIFKF-NKTIS 263
           FSI  +HSI  I +IF + N+TI+
Sbjct: 5   FSIMFIHSIFLILIIFIYSNETIA 28


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 331 FSI*LVHSIICISVIFKF-NKTIS 263
           FSI  +HSI  I +IF + N+TI+
Sbjct: 5   FSIMFIHSIFLILIIFIYSNETIA 28


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 237 LPKPLKNFSKSLSLTPKGRPPTYTRDPTIFQ 145
           L KPL +   S  +   G+ P Y+ + TI Q
Sbjct: 496 LNKPLMSLITSSEVRQPGKAPNYSVNWTIGQ 526


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 264 DMVLLNLKITEMQMMLCTS 320
           ++ ++NL I++  MM C S
Sbjct: 54  NLFVINLAISDFLMMFCMS 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,568
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)