Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n20
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   0.99 
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   5.3  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   5.3  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   9.2  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   9.2  

>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 506 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 405
           GF+ + I A+  F DRS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +3

Query: 429 KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSNTWLCSA 608
           ++KR+ C K  T    + + + ++    L+   + +LSS ++Y  L   L   +   C A
Sbjct: 22  ELKRLSCFKSFTYENDLKTFKALRSQLCLSHPSINSLSSFQTYHQLLCVLEQKHLSECVA 81

Query: 609 PW 614
           P+
Sbjct: 82  PF 83


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 186 NSKHVFDHFGCSSNYCFNNYV 248
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 495 IQKTYELAEFDLKNLSSLESYETLKIKLALSNTWLCSAPWK*PSRC 632
           +Q  Y L +FD  + SSL+++  L  KL+ S      A    PS C
Sbjct: 509 LQGLYALRDFDQISTSSLQTFTMLWKKLSTSLNMKEDAQNTAPSTC 554


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 510 ELAEFDLKNLSSLESYETLKIKLALSNTWLCSA 608
           E++E  LK L  L  Y T++  +  +   +CSA
Sbjct: 157 EISEVHLKRLDGLGMYSTIQQYIVTTKEAICSA 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,221
Number of Sequences: 5004
Number of extensions: 39234
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)