Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n15
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0051 + 9324941-9325192,9326033-9326305                           33   0.14 
12_02_0197 + 15392427-15392617,15392743-15393271                       30   1.3  
10_08_0807 - 20712066-20712290,20712750-20713339,20713415-207134...    29   3.1  
09_05_0008 + 20042390-20042845,20043323-20043457,20043539-200436...    29   3.1  
02_05_1113 + 34207997-34208380                                         29   3.1  
03_05_0292 + 22846273-22846377,22847161-22847823                       27   9.5  

>11_03_0051 + 9324941-9325192,9326033-9326305
          Length = 174

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -3

Query: 416 FNKRPCRTLRHCGCGRAGSGRLFGGARSRGCTVHFNVSVYEYGVCVGESCPFIQCLP 246
           F+K P    R  GC + G     GG R R  T+ F VS      CVG +   ++ LP
Sbjct: 82  FHKAPAAMQRTAGC-KIGGIEDMGGGRRRVGTLTFGVSFKINDACVGATPDLVEPLP 137


>12_02_0197 + 15392427-15392617,15392743-15393271
          Length = 239

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -3

Query: 389 RHCGCGRAGSGRLFGGARSRGCTV--HFNVSVYEYGVCVGESCPFIQCLPDPVKGG 228
           R CGC   G G    G R R C V  H  +    +GV  G   P  QCL + ++ G
Sbjct: 74  RGCGCCGYGGGGC--GDRGRYCGVRRHGGLGWLAWGVADGRIWPARQCLEEGLEAG 127


>10_08_0807 -
           20712066-20712290,20712750-20713339,20713415-20713463,
           20713669-20713821
          Length = 338

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 329 HDFGRLQKAYHSQPYHNRSGAGCGKDVY*KTRHQKKITRQYGHFQKAATELCCVVE 496
           +D G   + Y SQ     +GAG G+D      H++K+      F+K++ EL  V++
Sbjct: 148 NDDGGRDRQYSSQR-QGGAGAGGGRDGQMAAAHRQKVEEMKQLFEKSSKELSKVLD 202


>09_05_0008 +
           20042390-20042845,20043323-20043457,20043539-20043679,
           20043771-20043882,20044084-20044154,20044251-20044405,
           20044484-20044595,20044932-20045033,20045116-20045176,
           20045251-20045422,20045512-20045608,20045692-20045786,
           20045881-20046014,20046208-20046422
          Length = 685

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 380 GCGRAGSGRLFGGARSRG 327
           G GR G GR FGG R RG
Sbjct: 657 GGGRGGGGRGFGGGRGRG 674


>02_05_1113 + 34207997-34208380
          Length = 127

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 407 RPCRTLRHCGCGRAGSGR-LFGGARSR 330
           RP RT R   C   GSGR   GG RS+
Sbjct: 78  RPARTARRAACAEDGSGRGQHGGRRSQ 104


>03_05_0292 + 22846273-22846377,22847161-22847823
          Length = 255

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 422 WSFNKRPCRTLRHC-GCGRAGSG-RLFGGARSRGCTVHF 312
           WS+ +R  R  R C G GR G G    GG  + GC   F
Sbjct: 165 WSWRRRRRRRSRMCGGGGRRGRGSSTQGGGDACGCMAEF 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,468
Number of Sequences: 37544
Number of extensions: 268960
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)