Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n11
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    33   0.052
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    31   0.12 
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   4.5  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   4.5  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.5  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.9  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   7.8  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   7.8  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   7.8  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 1   SRRVQIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKM 174
           +R  QI     +RGN +  +PPPPL Y  P   AT    NA   NNA      TT  N  
Sbjct: 44  NRNWQIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVP 100

Query: 175 DTSRSNSTNSVAIAPYNKSKEPTLD 249
           +   ++ ++ +A   +N +  P +D
Sbjct: 101 EEYANDYSSELAYI-HNVNDMPHVD 124


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +1

Query: 187 SNSTNSVAIAPYNKSKEPTLDAGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLM 348
           +N    + I      K+  + AGE++ Y      N+C+ F+ +  R ++C D +E   L+
Sbjct: 476 NNDDPQIQIEILRSLKDTFIKAGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLL 534

Query: 349 IHFINT 366
             F+NT
Sbjct: 535 WEFVNT 540


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 1   SRRVQIKSMTDERGNFYY-NTPPPPLRYPS 87
           ++R+Q+   T   G++ + N PPP LR P+
Sbjct: 61  AQRLQLYKKTISEGDYNFDNVPPPELRTPT 90


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 568 FYNGGADMLGKDALAEAAKQLSLA 639
           FY    ++ GK  LAEAAKQ+ ++
Sbjct: 49  FYIPSFNLFGKGCLAEAAKQIKMS 72


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 67  PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 210
           PP+  P+  +    TN+   ++A G+ PP     K++  RS+S N  A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = +1

Query: 334 LSPLMIHFINTIR-DMCIDTNPINV-----NVVKRFESEETMIRHLIRLQKELGQGNAAE 495
           L+ ++ +F+  +  D  ++TNP  V     NV K FE  ET         K L  GN   
Sbjct: 3   LTSVLWNFVAKLAVDHGLNTNPDQVFQTVENVGKSFEKYETSFL------KSLFNGNLGL 56

Query: 496 SLPSDSNIFQASFVL 540
           SLPS  NI     VL
Sbjct: 57  SLPSAINILTLIIVL 71


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 438 HDTPPDSVAKRVGTRQRGRVPAERFEYI 521
           +D+ PD++ +RV  +QR   P + F+ I
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCI 187


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
 Frame = +1

Query: 127 NNAPGYVPPTTRDNKMDTSRSNST--NSVAIAPYNKSKEPTLDAGESIWYNKCVDFVQKI 300
           +N P   PP    N  D S S +T  N    +   +S +   D   SI  N    F  K 
Sbjct: 524 HNGPSTQPPEALPNGTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFTGKR 583

Query: 301 IRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFE 426
           +R     + + +SP   + I  I       +P N ++V+  E
Sbjct: 584 VRLGNVIESNVVSPDGTNRI-VIEPFERSVDPNNADIVEMVE 624


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 153 YDARQQNGHEPQQQHKLGSDRTVQQEQR 236
           Y   QQN  E  Q HK   D+   QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +1

Query: 4   RRVQIKSMTDE---RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKM 174
           R VQ++   +E   +G F    P    + PS+    I       ++  GY      D K+
Sbjct: 79  REVQLRHRINEFRKKGYFTAEAPVELKKAPSSNNIPISYRDNLLSHVNGYARSMHNDRKV 138

Query: 175 DTSRSNSTNSVAIAPYNK 228
             SRS   + + +A + +
Sbjct: 139 RASRSRRISGMILAHFKR 156


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 37   RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 132
            RG  Y N PP    Y SN         ++YNN
Sbjct: 953  RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,410
Number of Sequences: 5004
Number of extensions: 56836
Number of successful extensions: 228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)