Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n07
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   1.4  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   1.4  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   1.9  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   3.3  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   5.7  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   5.7  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    24   7.6  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   10.0 

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 139 IWYYHGDYVVHNISMGTTVKTFKCQKQLYKL 231
           IW +  DY+VHN     T+     Q  L+ +
Sbjct: 336 IWQHRRDYIVHNNRERNTITPLLSQNDLWNI 366


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 CVIWYYHGDYVVHNISMGTTVKTFKCQK 216
           C +W++ G +V+ NI+   +  T  C++
Sbjct: 102 CFLWFHGGGWVLGNINTENSFATHMCEQ 129


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 276 YDLRIRMTFLFLSS*KFVQLFLTLKSFYCSTHRDIMYYVISMVVPYY 136
           Y  R    F  LS  K+  ++LTL +F CS+   + ++ ++ VV  Y
Sbjct: 494 YKYRRSQCFSMLSFAKYA-IYLTLSTFVCSSRYLLDFHYLTQVVYGY 539


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = -1

Query: 368 FRIIVPSFCKTSNSLLQLSCFYDKYISHAPCTTYVFA*LSYSYRVESLYNCF 213
           F  +  +FC  +       C ++ Y SHA  T    A          +YNCF
Sbjct: 359 FEFLKKNFCDENQRFYSEVCEFNDYFSHANETNDHEAIRESFAHACGIYNCF 410


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 141 MVLPWR-LRST*YLDGYYSKNF*VSKTIVQ 227
           +++P R  ++   +D YY KNF + KT+++
Sbjct: 79  LIIPTREAKNIGIIDKYYKKNFILPKTLIR 108


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 302 DKYISHAPCTTYVFA 258
           D+ ISH PC TY+FA
Sbjct: 59  DRVISHVPC-TYLFA 72


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 115 FSSNMCCVIWYYHGDYVVHNIS 180
           FS+N+  + +Y+H D+V H  S
Sbjct: 156 FSANLNALNFYHHFDFVPHESS 177


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 168 YYVISMVVPYYTT 130
           Y++I  V+P+YTT
Sbjct: 243 YFIIDEVIPFYTT 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,287
Number of Sequences: 5004
Number of extensions: 34055
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)