Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n07
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0501 + 19742007-19742143,19742253-19742398,19742559-197425...    28   2.4  
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    28   2.4  
03_03_0220 - 15550944-15551090,15551169-15551219,15551364-155515...    27   4.1  
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420...    27   7.2  

>12_02_0501 +
           19742007-19742143,19742253-19742398,19742559-19742596,
           19742715-19742765,19743010-19743125,19743348-19743447,
           19743537-19743572,19743724-19743774,19743906-19744029,
           19744319-19744444,19744572-19744729
          Length = 360

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 247 IPIELKVCTIVFDT*KFL-L*YPSRYYVLRNLHGSTILHNTY*TRNIRVCFIISSVITL 74
           IPI L  C  ++   K + L +P  + V + +  + +L  TY  R I  CF+++S + L
Sbjct: 102 IPI-LSQCNTIYGFCKTIYLNHPKSFLVWQLIFSALLLGRTYSMRQIIGCFLVASGVIL 159


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 167 YIISRWVLQ*KLLSVKNNCTNFQLDRNKKVMRIR 268
           YI+ RW +  K L +K+NC+  +  + K   R R
Sbjct: 378 YILQRWTIDAKSLHIKSNCSTHEDPKIKLSTRRR 411


>03_03_0220 -
           15550944-15551090,15551169-15551219,15551364-15551554,
           15551625-15551925,15552050-15552240,15553283-15553357,
           15555584-15555707
          Length = 359

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 167 YIISRWVLQ*KLLSVKNNCTNFQLDRNKKVMRIRRSYKE 283
           YI+ RW +  K L +  NC N Q D +K ++  R  YKE
Sbjct: 144 YIMKRWTIDAKALQITRNC-NLQED-SKTILSNR--YKE 178


>11_06_0025 -
           19341127-19341339,19341426-19341620,19341912-19342088,
           19342505-19342672,19343533-19343574,19344129-19344214,
           19345218-19345545
          Length = 402

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 335 SNSLLQLSCFYDKYISHAPCTTYVFA*LSYSYRVESLYN 219
           S + L LSC+Y           Y+   +SYS   ESLYN
Sbjct: 101 SQTSLHLSCWYFLVSYSVIYEIYIVTFVSYSVIFESLYN 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,420,795
Number of Sequences: 37544
Number of extensions: 170363
Number of successful extensions: 281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)