Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n07
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-9|AAC71106.1|  452|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    27   5.0  
AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    26   8.7  

>U28941-9|AAC71106.1|  452|Caenorhabditis elegans Hypothetical
           protein F31D5.1 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 139 IWYYHGDYVVHNISMGTTVKTFKCQKQLYKLS 234
           IW   G Y++ N+S     K    Q  LYK+S
Sbjct: 118 IWVGQGQYIIENVSDENREKNTSIQWALYKMS 149


>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 392 FYA*LIIDFRIIVPSFCKTSNSLLQLSCF 306
           FY  ++ D  I+VP+   T  S+LQLS F
Sbjct: 179 FYGYIVDDIVILVPNVIATVISILQLSLF 207


>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 136 VIWYYHGDYVVHNISMGTTVKTFKCQKQLYKLS 234
           ++W   G Y+  NIS     K    Q   YK+S
Sbjct: 118 LLWVGQGQYITENISEANREKNTSIQWGFYKMS 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,204,838
Number of Sequences: 27780
Number of extensions: 187268
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)