Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n07
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.74 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   1.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.2  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   6.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 115 FSSNMCCVIWYYHGDYVVHNISMGTTVKT 201
           FS     V + YHG+  VH  S+ + +KT
Sbjct: 78  FSDLHALVEFIYHGEVNVHQRSLSSFLKT 106


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 187 YPSRYYVLRNLHGSTILHNTY*TRNIRVCFII 92
           YP   Y ++N H    ++N     N+R C ++
Sbjct: 142 YPQVPYTVKNFHPRCAVNNYNDPSNVRNCELV 173


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +2

Query: 263 IRRSYKEHVICICHKNNLIVANYYWFYKNSELLFGN 370
           + R+Y        +K+  +V  + W+YK    L  N
Sbjct: 59  VGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRN 94


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +2

Query: 263 IRRSYKEHVICICHKNNLIVANYYWFYKNSELLFGN 370
           + R+Y        +K+  +V  + W+YK    L  N
Sbjct: 59  VGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRN 94


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = -3

Query: 201 SFYCSTHRDIMYYVISMVVP 142
           +FY    R  ++Y +++++P
Sbjct: 224 TFYIIIRRKTLFYTVNLILP 243


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 147 VPYYTTHIRREISEC 103
           +P Y   +++ ISEC
Sbjct: 101 IPAYRAEVQKAISEC 115


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 377 IIDFRIIVPSFCKTSNSLLQLSCFYDKYIS 288
           + DF I +   C TS+    ++   D+YI+
Sbjct: 258 VCDFYIAMDVTCSTSSIFNLVAISIDRYIA 287


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +2

Query: 272 SYKEHVICICHKNNLIVANYYWFYKNSELLF 364
           S+ ++   +  +   I  +Y W YK+  +L+
Sbjct: 123 SFFKNAKSVTFQTMTIPNHYLWLYKDKTILY 153


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 268 TYSHDFLIPIELKVCTI 218
           T    F+IP  LKV TI
Sbjct: 403 TKPEGFMIPTHLKVLTI 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,821
Number of Sequences: 438
Number of extensions: 2560
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)