Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n06
         (105 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06505-1|AAA36157.1|  165|Homo sapiens ribosomal protein L12 pro...    28   4.8  
BC105603-1|AAI05604.1|  165|Homo sapiens ribosomal protein L12 p...    28   4.8  
BC094831-1|AAH94831.1|  165|Homo sapiens ribosomal protein L12 p...    28   4.8  
BC059950-1|AAH59950.1|  132|Homo sapiens RPL12 protein protein.        28   4.8  
BC050644-1|AAH50644.1|  165|Homo sapiens ribosomal protein L12 p...    28   4.8  
AL445222-15|CAH72929.1|  165|Homo sapiens ribosomal protein L12 ...    28   4.8  
AB209471-1|BAD92708.1|  197|Homo sapiens ribosomal protein L12 v...    28   4.8  

>L06505-1|AAA36157.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 60  IVDILKEPPRDRKKK 104
           I+  LKEPPRDRKK+
Sbjct: 81  IIKALKEPPRDRKKQ 95


>BC105603-1|AAI05604.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 60  IVDILKEPPRDRKKK 104
           I+  LKEPPRDRKK+
Sbjct: 81  IIKALKEPPRDRKKQ 95


>BC094831-1|AAH94831.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 60  IVDILKEPPRDRKKK 104
           I+  LKEPPRDRKK+
Sbjct: 81  IIKALKEPPRDRKKQ 95


>BC059950-1|AAH59950.1|  132|Homo sapiens RPL12 protein protein.
          Length = 132

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 60  IVDILKEPPRDRKKK 104
           I+  LKEPPRDRKK+
Sbjct: 48  IIKALKEPPRDRKKQ 62


>BC050644-1|AAH50644.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 60  IVDILKEPPRDRKKK 104
           I+  LKEPPRDRKK+
Sbjct: 81  IIKALKEPPRDRKKQ 95


>AL445222-15|CAH72929.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 60  IVDILKEPPRDRKKK 104
           I+  LKEPPRDRKK+
Sbjct: 81  IIKALKEPPRDRKKQ 95


>AB209471-1|BAD92708.1|  197|Homo sapiens ribosomal protein L12
           variant protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 60  IVDILKEPPRDRKKK 104
           I+  LKEPPRDRKK+
Sbjct: 113 IIKALKEPPRDRKKQ 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,653
Number of Sequences: 237096
Number of extensions: 102821
Number of successful extensions: 241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 76,859,062
effective HSP length: 15
effective length of database: 73,302,622
effective search space used: 1392749818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)