Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n06
         (105 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   2.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   7.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 37  ICDFNFNGLLTFLRSLLVTVKKK 105
           I D N  GL   ++ +L  +KKK
Sbjct: 111 IFDINLLGLTCMIQEVLKLMKKK 133


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 48 KITNKTTCHCKHFIST 1
          +ITN TT   K+ IST
Sbjct: 9  QITNSTTMSVKNEIST 24


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 10  EMFAVACRFICDFNFNGLLTFLRSL 84
           + FAVAC   C  + + LL    SL
Sbjct: 660 DTFAVACETFCLDDDDTLLEVALSL 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,704
Number of Sequences: 438
Number of extensions: 148
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)