Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21n04
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 31 0.57
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 30 1.3
04_03_0047 + 10118929-10119276 29 2.3
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 29 4.0
04_04_1560 - 34432491-34432837,34433097-34433292 29 4.0
11_01_0076 - 600256-600897 27 9.3
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 27 9.3
02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687 27 9.3
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 27 9.3
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 63 ILVNVGTVVSLQNIISNQILFLFHSQRQRK*LSVPSYG 176
IL+ V +VSL +IS I F + +R+R+ LS+PS+G
Sbjct: 596 ILIPVACLVSLAMVIS--IFFTWRGKRKRESLSLPSFG 631
>04_04_1624 - 34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 325 CQPTPAAEALVIARGIRFPCNTIGLD-GAVRLSGA 224
C P PAA+ + + I F C G+D GA+R G+
Sbjct: 1079 CVPKPAADEVALQVNIDFVCGQGGIDCGAIRAGGS 1113
>04_03_0047 + 10118929-10119276
Length = 115
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 428 ILTTVTVLPLHLQEFNQHLPRRLVHPEWSLPPLNSSYL 541
I T+V V + L +Q LP +HP + +PPL +S L
Sbjct: 63 ITTSVVVAAIFLSSCHQPLPSA-IHPSYRMPPLPTSPL 99
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 455 LHLQEFNQHLPRRLVHPEWSLPPLNSSYLYYKHRVVIQH 571
LHL+ + +LVHP LP + S L ++ ++ + H
Sbjct: 554 LHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKISVLH 592
>04_04_1560 - 34432491-34432837,34433097-34433292
Length = 180
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 406 DAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVVATFEFQLFV 543
DA PA P APPTPP S A A + + VA +FV
Sbjct: 133 DAPPPASPPPPPSNAPPTPPHP-SGAASALGAGGLAVAAMLLPVFV 177
>11_01_0076 - 600256-600897
Length = 213
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 186 GSVRVPLES*AGHAPLNLTAPSRPIVLHGKRMPRAITRASAAGVGWQQLHHDVRDDGICV 365
GS+R+ GH LN+ +PS + + +P + + S AGVG VR+D V
Sbjct: 14 GSIRLTSPRITGHRHLNVRSPSAAAAVLFRNIP-SPPQHSLAGVG-VSASAPVRNDAHVV 71
Query: 366 SYVYDAPATQPD 401
S D + D
Sbjct: 72 SPASDVTQSGAD 83
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 220 AMRRLISLLRQGQSYCTESECLEQLPGLPQPE 315
A R +S+ Q SYC + +Q+P P PE
Sbjct: 5 AAARAVSVAFQDASYCLDGGKAKQVPHAPSPE 36
>02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687
Length = 212
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 461 LQEFNQHLPRRLVHPEWSLPP-LNSSYLYYKHRVVI 565
LQ FN H RRL H +P L S + H +I
Sbjct: 155 LQRFNAHARRRLKHTSRCMPARLRSQAFHQSHMAII 190
>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 451 EHRHGREDCALVWPHLGSGCVAGASYT*LTQMPSSRTS 338
+H H DC V L SGC +G+ Y+ RTS
Sbjct: 1476 QHGHNNLDCTSVPNFLPSGCSSGSVYSRRFDAMRKRTS 1513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,381,530
Number of Sequences: 37544
Number of extensions: 377948
Number of successful extensions: 1169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -