Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21n01
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.085
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.26 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    20   7.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    20   7.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.6 bits (56), Expect = 0.085
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 13  KNANIHQNIDGQNHYRRNGTRRDGGR 90
           +NAN +QN D QN  ++NG R++  R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464



 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 13  KNANIHQNIDGQNHYRRNGTRRDGGR 90
           +N N  QN + QN  R+N  +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 100 LLEIGHRLCGFRFGGN 53
           +LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +2

Query: 23  IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 133
           I++K   G  +  TA    +E  AD +    D   VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +2

Query: 23  IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 133
           I++K   G  +  TA    +E  AD +    D   VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +2

Query: 23  IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 133
           I++K   G  +  TA    +E  AD +    D   VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
          protein.
          Length = 117

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 2  SNSVKMQIFIKTLTGKTITAETEPAET 82
          ++++K  + +  L   T+TAETE  ++
Sbjct: 2  ASAIKALLIVCALFIYTVTAETEEGQS 28


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
          protein.
          Length = 117

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 2  SNSVKMQIFIKTLTGKTITAETEPAET 82
          ++++K  + +  L   T+TAETE  ++
Sbjct: 2  ASAIKALLIVCALFIYTVTAETEEGQS 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,102
Number of Sequences: 438
Number of extensions: 1297
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)