Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m19
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0633 - 30492742-30492987,30493082-30494194                       29   1.7  
12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973...    28   5.3  
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563...    27   9.2  

>02_05_0633 - 30492742-30492987,30493082-30494194
          Length = 452

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 219 CNEKKAASAVSWRLAKRSCCICVRRRPQRRC 127
           C+ +KAA AV  + A R+C  C+RRR +  C
Sbjct: 3   CSSEKAAGAVGGKAA-RACDSCLRRRARWYC 32


>12_02_0780 +
           23094989-23095380,23096132-23096573,23096687-23097311,
           23098240-23098280,23098371-23098439,23098779-23098879,
           23099422-23099500,23099946-23100044,23100123-23100191,
           23100283-23100332,23100416-23100497,23100997-23101091,
           23101263-23101395
          Length = 758

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 273 KSAHLTKLLSSQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIE-FMDK 449
           +  H+   ++    YL+HF+ L+ ++D++   +     W +  + D  L + + E F+  
Sbjct: 575 RRVHMALDIARGMNYLHHFSPLIIHRDLKSSNLLVDKNWTVKVA-DFGLSRLKRETFLTT 633

Query: 450 TTELNLRSWPAQE 488
            T      W A E
Sbjct: 634 KTGKGTPQWMAPE 646


>05_05_0285 -
           23855219-23855371,23855391-23856063,23856239-23856301,
           23856478-23856604,23856751-23856897,23856968-23856974,
           23857203-23857379
          Length = 448

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 231 NSCLCNEKKAASAVSWRLAKRSCCICVRRRPQRRCTLAPTRTPTS 97
           N  L ++K +A +   RLAK  CC    + PQR  +  P R+ +S
Sbjct: 391 NKRLFDDKLSAHSPGRRLAKGLCC-SAHKAPQRSLSGNPWRSASS 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,228,895
Number of Sequences: 37544
Number of extensions: 275637
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)