Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m19
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    29   1.5  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical ...    28   3.6  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   6.2  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   6.2  
Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 127 YVSADTDADEPIIYFENITECLTDDQCDKFTYF 29
           Y S  TD       F+N T  L  D CD+F YF
Sbjct: 327 YSSTYTDLGAKFSTFDNFTGPLGKDDCDEFQYF 359


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
 Frame = +3

Query: 159 YSTIVLLVAMIPLT--PLFSRYKDSYLLYSFR-----LIDLLRASKSAHLTKLLSSQAT- 314
           +ST+ ++ + + +T  P    Y  S L +S        + LL +S SA    +++  A  
Sbjct: 50  FSTLGIVFSALEITAKPFSHNYNGSLLYFSTSELPETFVSLLMSSWSAFYIIVVAFIAVQ 109

Query: 315 YLYHFACLMKYKDIQKYEVQQLIEWAI 395
           ++Y + CL  Y   +K++  + + W I
Sbjct: 110 FVYRYLCLTNYNATKKFDGVKTVFWII 136


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 153 VRRRPQRRCTLAPTRTPTSLLF 88
           +RR+PQ   TL PT TPT  LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical protein
            F40F12.5 protein.
          Length = 1144

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 413  GLATVSHRIYGQNHRTQFAFVASPRVLLTRLPPYG 517
            G AT  H +       Q  F  +P VL+ +LP YG
Sbjct: 897  GAATSQHLLERHMRSAQVTFAKAPPVLIMQLPRYG 931


>AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical
           protein Y26D4A.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 332 VFDEIQRHSKIRGAAVDRMGH*RIPRHGLA----TVSHRIYGQN 451
           +F E+Q+HS+I  A V+++   R   H LA    T  H  YG +
Sbjct: 285 LFKELQKHSRILYATVNKIPVVRKTNHALACVRKTTEHLAYGSS 328


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform b
           protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 115 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 20
           +TDADE  I+ EN+     +D  +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform a
           protein.
          Length = 2456

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 115 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 20
           +TDADE  I+ EN+     +D  +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603


>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 111 VSALTYNDAVAGA*HKYSTIVLLVAMIP---LTPLFSRYKDSYLLYSFRLIDLLRASKSA 281
           +  + +ND+     ++++     +A+IP   + P F      +L+YS    + L   K+ 
Sbjct: 10  IETIHFNDSYMNFKYQFNEFPTFLAIIPWLYMIPTFLVIYKIFLIYSKTNWEQLEPGKNK 69

Query: 282 H--LTKLLSSQATYLYHF 329
           H  LT  LS   +YL+ F
Sbjct: 70  HVFLTLSLSLIFSYLFFF 87


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 229 ICCIRFVS*TFCELLN-RRTLPNCCLRKQLTYTIL 330
           +CC    +  FC+L+N R      C+RK +  +IL
Sbjct: 43  LCCEMVPAGAFCQLINCRHVYCRICIRKYMELSIL 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,280
Number of Sequences: 27780
Number of extensions: 250784
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)