Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m18
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...   143   6e-35
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274...    29   2.8  
07_01_0943 - 7959813-7960113,7960193-7960363,7960446-7961278,796...    28   3.7  

>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score =  143 bits (347), Expect = 6e-35
 Identities = 71/126 (56%), Positives = 91/126 (72%), Gaps = 15/126 (11%)
 Frame = +1

Query: 172 MYLYNLTLQGSSAITHAVHGNFSG---------------TKQQEIIISRGKTLELLRPDP 306
           MYLY+LTLQ ++    AV G+FSG               +  QEI ++RG TLELLRPDP
Sbjct: 1   MYLYSLTLQRATGAVCAVIGSFSGRDSKKSAASGSSSSSSSTQEIAVARGTTLELLRPDP 60

Query: 307 NTGKVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQE 486
            TG++ TL+ +++FG +RS+  FRLTG TKDY+VVGSDSGR++ILEY P +N L+KVHQE
Sbjct: 61  ETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRLDKVHQE 120

Query: 487 TFGKSG 504
           TFGKSG
Sbjct: 121 TFGKSG 126


>05_01_0350 +
           2736096-2736242,2736460-2736508,2736704-2737046,
           2743911-2744499
          Length = 375

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 25  KRSSMACSESAILPATACAGSPVKIKYCIEPHCG 126
           K SS+A   +A+L A AC+G     +  IE  CG
Sbjct: 194 KASSLAAVAAAVLVAAACSGRAPVAEATIESTCG 227


>07_01_0943 -
           7959813-7960113,7960193-7960363,7960446-7961278,
           7961360-7961821,7961899-7962606
          Length = 824

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 271 RGKTLELLRPDPNTGKVHTLMKIEIFG-VVRSIMAFRL 381
           +GK  EL  P+P  GK  TLM +   G VVR++  F L
Sbjct: 551 KGKVGELA-PEPKRGKAATLMPVSKAGKVVRALAQFEL 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,101
Number of Sequences: 37544
Number of extensions: 313047
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)