Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21m18
(505 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein. 199 5e-51
BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, sub... 199 5e-51
BC009780-1|AAH09780.1| 275|Homo sapiens SF3B3 protein protein. 199 5e-51
AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SA... 199 5e-51
U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding fa... 35 0.14
U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein. 35 0.14
L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1 pr... 35 0.14
BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA bin... 35 0.14
BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA bin... 35 0.14
BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA bin... 35 0.14
AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA bin... 35 0.14
AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum G... 35 0.14
BC009252-1|AAH09252.2| 644|Homo sapiens ZNRF3 protein protein. 29 7.0
>D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein.
Length = 1253
Score = 199 bits (485), Expect = 5e-51
Identities = 88/111 (79%), Positives = 104/111 (93%)
Frame = +1
Query: 172 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 351
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 37 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 96
Query: 352 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSG 504
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSG
Sbjct: 97 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSG 147
>BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b,
subunit 3, 130kDa protein.
Length = 1217
Score = 199 bits (485), Expect = 5e-51
Identities = 88/111 (79%), Positives = 104/111 (93%)
Frame = +1
Query: 172 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 351
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 352 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSG 504
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSG
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSG 111
>BC009780-1|AAH09780.1| 275|Homo sapiens SF3B3 protein protein.
Length = 275
Score = 199 bits (485), Expect = 5e-51
Identities = 88/111 (79%), Positives = 104/111 (93%)
Frame = +1
Query: 172 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 351
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 352 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSG 504
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSG
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSG 111
>AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SAP
130 protein.
Length = 1217
Score = 199 bits (485), Expect = 5e-51
Identities = 88/111 (79%), Positives = 104/111 (93%)
Frame = +1
Query: 172 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 351
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 352 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSG 504
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSG
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSG 111
>U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding
factor protein.
Length = 1140
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 175 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 354
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 355 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEY 447
+ + FR G +KD + + + ILEY
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEY 91
>U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein.
Length = 1140
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 175 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 354
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 355 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEY 447
+ + FR G +KD + + + ILEY
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEY 91
>L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1
protein.
Length = 1140
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 175 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 354
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 355 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEY 447
+ + FR G +KD + + + ILEY
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEY 91
>BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 175 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 354
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 355 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEY 447
+ + FR G +KD + + + ILEY
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEY 91
>BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 175 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 354
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 355 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEY 447
+ + FR G +KD + + + ILEY
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEY 91
>BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 175 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 354
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 355 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEY 447
+ + FR G +KD + + + ILEY
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEY 91
>AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 175 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 354
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 355 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEY 447
+ + FR G +KD + + + ILEY
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEY 91
>AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum
Group E Complementing protein protein.
Length = 1140
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/91 (23%), Positives = 44/91 (48%)
Frame = +1
Query: 175 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 354
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 355 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEY 447
+ + FR G +KD + + + ILEY
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEY 91
>BC009252-1|AAH09252.2| 644|Homo sapiens ZNRF3 protein protein.
Length = 644
Score = 29.5 bits (63), Expect = 7.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 40 ACSESAILPA-TACAGSPVKIKYCIEPHCGHQLLIFKGIG*NKITMYLYNLTLQGSSAIT 216
+C S +L T A +PV +++ PHC H ++ KG + + + NL+ +T
Sbjct: 13 SCGSSPVLTGFTGSAWTPVLLQHHTCPHCRHNIIEQKG-NPSAVCVETSNLSRGRQQRVT 71
Query: 217 HAVH 228
VH
Sbjct: 72 LPVH 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,948,778
Number of Sequences: 237096
Number of extensions: 1715717
Number of successful extensions: 2653
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2653
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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