Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m12
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    29   1.9  
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853...    28   3.3  

>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +3

Query: 141 IKVASSPQLXLLYXNAYSAVSCGNYSILCNLVXNGEYDLNAIMFNCAEXKLNKGQMLFXT 320
           I V  S +L LL    ++ +    Y   C ++  G Y +NA++FN  +   +K Q L   
Sbjct: 676 IAVTPSCKLQLLMWTYFAELGANIY---CQILKIGNYQMNALLFN-PQAYNSKSQFLIFI 731

Query: 321 KIYRPDNN 344
            + + + N
Sbjct: 732 SLQQQEAN 739


>04_04_0639 +
           26883810-26883821,26884131-26884307,26885276-26885339,
           26886614-26887734,26888193-26888481,26888528-26888658,
           26888910-26889133,26889220-26889286,26889744-26889803,
           26889896-26889979,26890290-26890301
          Length = 746

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 390 LRRVWATTXLQQRPSYYYRAD 328
           LR  W  +    RPSY+YRAD
Sbjct: 40  LRNPWRCSFDSARPSYFYRAD 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,752,179
Number of Sequences: 37544
Number of extensions: 134470
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)