Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m12
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    32   0.14 
U00065-8|AAL02473.1|  501|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr...    27   4.0  
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend...    27   4.0  
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo...    27   4.0  
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor...    27   4.0  

>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +1

Query: 67  KMKTYXIL*LKTNITXKNGALAPILSRWLARRNLXCCTXTPILQCRAATIVFCAIWCXTA 246
           KM  + I+ L   I      +  IL+ WLA +    CT   I+      +V CA+WC + 
Sbjct: 61  KMSCFKIMYLLGIIDFMITYVNSILTGWLAMKGAVYCTHPNIIYISG--MVVCALWCSSC 118

Query: 247 NTIL 258
            T L
Sbjct: 119 MTAL 122


>U00065-8|AAL02473.1|  501|Caenorhabditis elegans Hypothetical
           protein D1044.2b protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 243 GEYDLNAIMFNCAEXKLNKGQMLFXTKIYRPDNNKTDAAVNXSSPXRAVETENDDD 410
           G +D  A+ FN     ++K   L  TK  RP+ + T    + S   R +ET  +D+
Sbjct: 260 GSFDGEAVKFNEELEAIDKA--LQTTKKQRPELSVTPQPEDLSGDARVIETTEEDE 313


>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
           protein D1044.2c protein.
          Length = 1090

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 243 GEYDLNAIMFNCAEXKLNKGQMLFXTKIYRPDNNKTDAAVNXSSPXRAVETENDDD 410
           G +D  A+ FN     ++K   L  TK  RP+ + T    + S   R +ET  +D+
Sbjct: 810 GSFDGEAVKFNEELEAIDKA--LQTTKKQRPELSVTPQPEDLSGDARVIETTEEDE 863


>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
           protein D1044.2a protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 243 GEYDLNAIMFNCAEXKLNKGQMLFXTKIYRPDNNKTDAAVNXSSPXRAVETENDDD 410
           G +D  A+ FN     ++K   L  TK  RP+ + T    + S   R +ET  +D+
Sbjct: 810 GSFDGEAVKFNEELEAIDKA--LQTTKKQRPELSVTPQPEDLSGDARVIETTEEDE 863


>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
           protein F52B5.1 protein.
          Length = 1119

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 167 KLRRASHLDNMGANAPFX*VIFVFNYKX*YVFIFTVDXGVHNDVWRNVARVCHF 6
           K RR S    + + AP   V+F+   K     +FT    ++N+ WR  AR   F
Sbjct: 11  KARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKF 64


>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
           chloride bicarbonateanion exchanger alternative variant
           a protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 167 KLRRASHLDNMGANAPFX*VIFVFNYKX*YVFIFTVDXGVHNDVWRNVARVCHF 6
           K RR S    + + AP   V+F+   K     +FT    ++N+ WR  AR   F
Sbjct: 53  KARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKF 106


>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
           transporter ABTS-1 protein.
          Length = 1119

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 167 KLRRASHLDNMGANAPFX*VIFVFNYKX*YVFIFTVDXGVHNDVWRNVARVCHF 6
           K RR S    + + AP   V+F+   K     +FT    ++N+ WR  AR   F
Sbjct: 11  KARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKF 64


>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
           protein.
          Length = 1119

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 167 KLRRASHLDNMGANAPFX*VIFVFNYKX*YVFIFTVDXGVHNDVWRNVARVCHF 6
           K RR S    + + AP   V+F+   K     +FT    ++N+ WR  AR   F
Sbjct: 11  KARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKF 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,688,918
Number of Sequences: 27780
Number of extensions: 123349
Number of successful extensions: 324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)