Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m12
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              24   0.77 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   1.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   2.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   2.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.5  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 6   KMANTSNITPDIIVNAXINSEDENVLXFI 92
           K   T+    D I    IN +DENVL FI
Sbjct: 35  KEIGTAQQIIDDINEGKINMDDENVLLFI 63


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 3   RKMANTSNITPDIIVNAXINSEDE 74
           R  +NTSNI+  +I++  + S D+
Sbjct: 88  RDRSNTSNISKTVILSDKLESSDD 111


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = +3

Query: 240 NGEYDLNAIMFNCAEXKLNKGQMLFXTKIYRPDNNKT 350
           N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 390 NNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 153  SSPQLXLLYXNAYSAVSCGNYSI 221
            SSP   L+  +A  A SCG  S+
Sbjct: 1257 SSPATALMLQHAPPAYSCGTVSV 1279


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = +3

Query: 240 NGEYDLNAIMFNCAEXKLNKGQMLFXTKIYRPDNNKT 350
           N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 390 NNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = +3

Query: 240 NGEYDLNAIMFNCAEXKLNKGQMLFXTKIYRPDNNKT 350
           N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 390 NNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 17  HEQHYARHHCER 52
           H+Q  AR++CER
Sbjct: 238 HQQIMARYNCER 249


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -1

Query: 218 TIVAARHCRIGVXVQQXKLRRASHLDNMGANAP 120
           +++ ARH    V   +     ASH   +  N P
Sbjct: 646 SVITARHAGEYVCTAENAAGTASHSTTLTVNVP 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,262
Number of Sequences: 438
Number of extensions: 1706
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)