Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m06
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    27   2.3  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   6.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   6.9  

>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
 Frame = +3

Query: 189 SWNVWNGDXGDI-----XYVFFDEQQVWKGDADSKRATI---NVIVSGQFNMRVKLCNED 344
           SWN+W G  GD+      ++  ++   W+G   S        + + + +    VK  N  
Sbjct: 179 SWNLWAGGSGDVVITASDFIMSNDFPYWQGQNTSNMTNTFISDTLAALERVQSVKGTNNV 238

Query: 345 GSALSRLSVPADGPS 389
              +     P DGPS
Sbjct: 239 TFWVGETGWPTDGPS 253


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 310 NLTCVSNFAMRTAVRSHGYLSL 375
           N +C  N A+ +AVR+HG+ ++
Sbjct: 409 NHSCSPNIAIYSAVRNHGFRTI 430


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -1

Query: 129  NLFL-RAHNCV--RPNXSPACRESXWXRXPPTTKR 34
            NLF  + H CV   PN  P   ES   R P  TKR
Sbjct: 1231 NLFRQKLHECVPIAPNPPPIIGESKSTRKPRPTKR 1265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,211
Number of Sequences: 5004
Number of extensions: 35135
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)