Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m06
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708...    31   0.75 
07_03_0757 - 21280001-21280348,21280382-21280642,21281718-212818...    29   3.0  
11_01_0089 + 670597-672210                                             27   9.2  
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064...    27   9.2  
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699...    27   9.2  

>02_02_0134 +
           7082462-7082627,7084199-7084325,7084404-7084611,
           7084864-7084990,7085071-7085255,7085332-7085454,
           7085777-7085836,7085980-7086117
          Length = 377

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 161 LY*IFVSGGLVIYFYERIIAFGPXDHRR 78
           LY IF   GL  YFYE +  + P +HR+
Sbjct: 213 LYGIFPYSGLKFYFYETMKTYVPEEHRK 240


>07_03_0757 -
           21280001-21280348,21280382-21280642,21281718-21281843,
           21281907-21282111,21282196-21282317
          Length = 353

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 258 KGDADSKRATINVIVSGQFNMRVKLCNEDGSALSRLSVPADGPSI*MF*RWKFLLAPQWR 437
           K D  S    I  IV+GQ N R  L  ++   +S +S+PA   S      W +L    WR
Sbjct: 57  KSDVFSFGVLIIEIVTGQRNNRPYLFEQNEDIISTVSIPASSYST----MWYYLRLQVWR 112


>11_01_0089 + 670597-672210
          Length = 537

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 141 RWPRNLFLRAHNCVRP-NXSPACRESXWXRXPPTT 40
           RWPR LFL      RP   +  C      R PPTT
Sbjct: 51  RWPRGLFLSPLTKPRPTRRAHQCVPHPRPRLPPTT 85


>01_06_1774 +
           39803747-39803825,39805338-39805555,39805856-39806436,
           39807239-39808136
          Length = 591

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 126 NYEATAYENLIXLKEQVDVHVSWNVWNGDXGDIXYVFF 239
           NY +TA  N++      D H SW   N + G + Y F+
Sbjct: 500 NYLSTALANIMRKVTTRDGHSSWLTDNINLGKLDYYFY 537


>01_06_0893 - 32766994-32768841,32769596-32769782,32769860-32769987,
            32770080-32770283,32770373-32770523,32771424-32771533,
            32772534-32772903,32773031-32773189,32773719-32773848,
            32773921-32773989,32774066-32774154,32774319-32774439,
            32775878-32776148
          Length = 1278

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 189  SWNVWNGDXGDIXYVFFDE---QQVWKGDADSK 278
            +WN W GD     Y++ D+    Q+ KGDA ++
Sbjct: 1048 NWNPWKGDSNANKYMWKDDSPYHQMTKGDAHTQ 1080


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,614
Number of Sequences: 37544
Number of extensions: 252648
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)