Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21m06
(525 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr... 35 0.041
AF024492-3|AAF98619.1| 918|Caenorhabditis elegans Hypothetical ... 30 0.88
Z75531-8|CAA99801.1| 188|Caenorhabditis elegans Hypothetical pr... 28 3.6
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 8.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 8.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 8.2
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 27 8.2
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 27 8.2
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 27 8.2
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 27 8.2
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 27 8.2
>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
F21H12.6 protein.
Length = 1374
Score = 34.7 bits (76), Expect = 0.041
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +3
Query: 123 INYEATAYENLIXLKEQVDVHVSWNVWNGDXGDIXYVFFDEQQVWKGDADSKRATI---N 293
IN ++ YE L EQ+D VS + D F+ + VW D+K A I +
Sbjct: 1249 INKKSEGYEALKSKSEQIDATVSEELKKLDSNWTGNQFYVKLLVWLSADDTKTALISAKH 1308
Query: 294 VIVSGQFNMRVKLCNEDGSAL 356
GQF KL N+ G L
Sbjct: 1309 AAALGQFGRCAKLLNKAGDEL 1329
>AF024492-3|AAF98619.1| 918|Caenorhabditis elegans Hypothetical
protein F14F9.4 protein.
Length = 918
Score = 30.3 bits (65), Expect = 0.88
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 341 GRQCALTAICPCRRPVNINVLKMEIFIGPTMAITFPTPRAAMLTNHVYYKY 493
G Q L C C + V ++L E I P IT T + + H Y+ +
Sbjct: 704 GDQTLLQVACSCGKEVYSSLLPEEFLICPNCKITIDTHTMSTVWKHEYFPF 754
>Z75531-8|CAA99801.1| 188|Caenorhabditis elegans Hypothetical
protein C54D10.9 protein.
Length = 188
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 353 RTAVLIAKFDTHVKLPAHNNINGSP 279
R L++K D H P HNN++GSP
Sbjct: 68 RDPALVSK-DVHWTFPDHNNLDGSP 91
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,196,595
Number of Sequences: 27780
Number of extensions: 207353
Number of successful extensions: 466
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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