Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m04
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    25   4.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   7.0  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    24   9.3  

>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 374 CNRIKVKKN*SVLYFVNKSFFVK 442
           C   KVKK     Y +N+ FF+K
Sbjct: 31  CLNFKVKKRRGDFYVINERFFIK 53


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 83  PEDTVNKQNETIHTTS 36
           P++  NK N++IHTTS
Sbjct: 460 PQEVGNKVNDSIHTTS 475


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 280 VHEPTLVPRIQQTLRAQMVGSETFSVNFFEDL 185
           +H+P LVP +          +  FS+N+F  +
Sbjct: 560 LHDPNLVPYLHGLFPVDEARNVRFSINYFTSI 591


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -3

Query: 206 SELFRRSREATTGGIVSFPYICALLQILNS*VINHCYYTFKP 81
           S+  R  REA  G ++  P IC ++  + +    +  + + P
Sbjct: 92  SQTVRVQREALLGRLLRHPNICRVIDCIRTPACTYILFEYVP 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,532,510
Number of Sequences: 5004
Number of extensions: 26312
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)