Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m04
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0160 + 14585559-14586230                                         27   5.2  
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006...    27   6.9  
10_08_0753 + 20324011-20324113,20324210-20324231,20324344-203244...    27   9.1  

>12_02_0160 + 14585559-14586230
          Length = 223

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 262 PALARGHHSGAAAGVPRGVRSGQEGLVLPLDLRERR 369
           PAL RG   GAA GV    R G  G+      R RR
Sbjct: 36  PALLRGRRGGAATGVAASPRGG--GVAAETARRRRR 69


>05_04_0224 -
           19198722-19198835,19198947-19199436,19200478-19200641,
           19202534-19202632,19204069-19204175,19204278-19204401,
           19205113-19205242,19205314-19205433,19205861-19206002,
           19207243-19207326,19207651-19207742,19207855-19207944,
           19208057-19208136,19208312-19208451,19208587-19209067
          Length = 818

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 361 HGGPEVTQDPPGRYVHREARQQQRRYDVHEPT--LVPRI 251
           +G P +T  PP    H++AR+ +   ++H+ T  LVP +
Sbjct: 561 YGAPALTGPPPEFVDHQQARKVKNDVNLHKDTIRLVPDV 599


>10_08_0753 +
           20324011-20324113,20324210-20324231,20324344-20324400,
           20324704-20324785,20324903-20324998,20325265-20325389,
           20325484-20325502,20325598-20325744
          Length = 216

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 42  CVNCFILFIYCVFRFKCV 95
           C NC I F++C+ +F C+
Sbjct: 115 CDNCIIGFMFCLQQFACI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,153,486
Number of Sequences: 37544
Number of extensions: 182188
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)