Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21m04
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.      27   8.2  

>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 230 DGRLRDFFSELFRRSREATTGGIVS 156
           DGR +DF S L +R +E   GGI++
Sbjct: 227 DGRQKDFKSNLAQREKEPVRGGIIT 251


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
            protein H16O14.1 protein.
          Length = 977

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 313  REARQQQRRYDVHEPTLVPRIQQTLRAQMVGSETFSVN 200
            RE RQ++RRY+VH+     ++ + +R +   ++   VN
Sbjct: 898  REERQRKRRYNVHKMHTAVKLNELMRQKSSDAQLVFVN 935


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 304 RQQQRRYDVHEPTLVPRIQQTLRAQMVGSETFSVNFFEDL 185
           +QQ      H P+L+P    ++R+  +G  +     FEDL
Sbjct: 852 QQQHHHQSHHHPSLIPPTTTSIRSPTLGPPSSQDRSFEDL 891


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical protein
            C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 304  RQQQRRYDVHEPTLVPRIQQTLRAQMVGSETFSVNFFEDL 185
            +QQ      H P+L+P    ++R+  +G  +     FEDL
Sbjct: 918  QQQHHHQSHHHPSLIPPTTTSIRSPTLGPPSSQDRSFEDL 957


>Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical
           protein K05C4.6 protein.
          Length = 678

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 207 EKVSEPTICALRVCCIR 257
           E+V+EP +CALR C  R
Sbjct: 388 EEVTEPALCALRHCTAR 404


>AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.
          Length = 678

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 207 EKVSEPTICALRVCCIR 257
           E+V+EP +CALR C  R
Sbjct: 388 EEVTEPALCALRHCTAR 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,659,612
Number of Sequences: 27780
Number of extensions: 158009
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)