Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21l23
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 1.2
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 1.2
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 2.2
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.2
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 2.9
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 3.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 3.8
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 5.0
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 5.0
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 5.0
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 5.0
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 6.6
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 8.7
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.7
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 25 8.7
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 468 TLGPMVYVVLPLAGSNTTIFLSGSGY 391
T+ V VVLP AG+NT +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 468 TLGPMVYVVLPLAGSNTTIFLSGSGY 391
T+ V VVLP AG+NT +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 44 ATKRKIGDSSSDDNQPKRERVES 112
A+KRKI SSSDD++ K E S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 423 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 334
NT ++ +G G ++ +H +LFK R F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 453 VYVVLPLAGSNTTIFLSGSGYNLSS 379
V VV+P AG TT SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 453 VYVVLPLAGSNTTIFLSGSGYNLSS 379
V VV+P AG+ TT SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 48 LNARLAIRAATTTSQSGKEWK 110
LNA L +RA S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 3.8
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = +2
Query: 161 FNVKHDETGVMCYFTP--SSVQLE----PRELTKMLWQ-EQMAINVKRGNFSILNCSCFE 319
F + H+ + +F+ S +Q E R L +L EQ++ V + FS N
Sbjct: 354 FLINHEHMRLRVFFSSCCSKIQSEIYSTNRNLLSVLQTVEQISKEVDKEYFSSTNHQLIR 413
Query: 320 GRFLKNEFCRLANLNSLHEW 379
E+C+ ++NS EW
Sbjct: 414 SEI--GEYCKTLDINSCREW 431
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 390 NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 289
N + C+ + +NSFFKNL S +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 5.0
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 174 CFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 19
C +L P+L + + +SP + +L+S + I R+ A L C C
Sbjct: 538 CPSLAVPPILTILASLQHTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDC 589
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 137 YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 226
++NN+ N+KH E G + Y TP +LE
Sbjct: 61 FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 5.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 265 HLLLPQHLCQLAWLQLNGRRR 203
H+++PQ Q +W+ +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -2
Query: 495 NQNPQGLPCTLGPMVYVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLASRQNS--FFK 328
N + G P +L + PLA S T+ L S S NL LF+ + +N+ +F
Sbjct: 203 NNSSSGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262
Query: 327 NLPS 316
P+
Sbjct: 263 RRPT 266
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 395 DTTCLPIRANYSN*PVDKIRFSKICLRNNYNSVLKSC 285
DT L N+S + ++ F++ LRN +L C
Sbjct: 1226 DTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDEC 1262
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 56 KIGDSSSDDNQPKRERVESGEDQQLV 133
K+ +SS DNQP++++++ LV
Sbjct: 138 KMKNSSESDNQPEKKKIKKQNPTDLV 163
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 406 IGLGIQLVFPFVQTIQISQSTKFVF 332
+G+GI + P + T I T FVF
Sbjct: 1223 LGIGIATISPSIGTASIISGTAFVF 1247
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 296 ILNCSCFEGRFLKNEFCR--LANLNSLHEWEDKLYPEPDKNIVVLEPANGK 442
+++CS E + + FCR L H + E D I++L+ A K
Sbjct: 170 VISCSTIENKIMAISFCRKVLGQTGDGHFSPVGGFSESDNKILILDVARFK 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,210
Number of Sequences: 5004
Number of extensions: 46335
Number of successful extensions: 158
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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