Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21l23
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   2.9  
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    29   2.9  
01_07_0379 + 43177978-43178572,43178643-43178674                       29   2.9  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   3.8  
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    27   6.6  
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801...    27   6.6  
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026...    27   8.8  
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    27   8.8  

>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +2

Query: 320 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP 481
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKP 400


>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 12  NHSRQRTSVAWQLNARLAIRAATTTSQSGKEWKVVRTSSW 131
           +H R  +S +   +ARL  R A  TS SG+ W+ V  + W
Sbjct: 174 HHRRNSSSSSSSASARLVTRPAAATSGSGR-WRSVFGAVW 212


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 174 CFTLKAAPLLLLYG-TSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 19
           C+    AP +L YG  SC +  L  L R     ++L   +L L+ +  +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 269 INVKRGNFSILNCSCFEGRFLKNEFC 346
           + + +      +CSC+ G ++KN FC
Sbjct: 72  MGICKNTIGSFDCSCYPGSYMKNGFC 97


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +2

Query: 11  EP-QQTAHVGSMATKRKIGDSSSDDNQ---PKRER 103
           EP ++T  V   A KR IGD  +DD +   PKR R
Sbjct: 63  EPSKKTRGVSQRAKKRSIGDDHADDTEQPPPKRSR 97


>04_04_1639 +
           34978498-34978585,34979049-34979343,34980070-34980107,
           34980655-34980788,34980868-34980973,34981451-34981536,
           34981962-34982150,34982477-34982641,34982898-34982921,
           34983235-34983348,34983605-34983850
          Length = 494

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 275 VKRGNFSILNCSCFEGRFLKNEFCRLANLNS--LHEWEDKLYPEPDKNIVVLEP 430
           ++  NF++L  SC EG+F   E   L  L S  LH +E +  P     +  L P
Sbjct: 254 IRDRNFNMLTDSCLEGQFSNEEGTELVRLASRCLH-YEPRERPNVRSLVQALAP 306


>12_02_0410 +
           18701258-18701327,18701398-18701630,18701782-18702639,
           18703006-18703865,18704285-18704395,18704486-18704567,
           18704643-18704735,18704795-18704989
          Length = 833

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 384 SSHSCKLFKLASRQNSFFKNLPSKQLQFSIEKLPRFTLIAICS 256
           S + CK+ ++  R  + F +LPS  + +S  +  + TLI +C+
Sbjct: 750 SYYVCKMLRVNGRYRTEFTDLPS--ILYSASRFDQKTLINLCA 790


>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 116 EDQQLVPYNNNNGAAFNVKHDETGVMCYFTPSSVQLEPRELTKM 247
           ED+ L   N+ +   FN   +ETG  C  + +   +  R+ T +
Sbjct: 222 EDRMLTAENSGSTECFNYLMEETGANCNISDNGEPVNKRKATDL 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,909,332
Number of Sequences: 37544
Number of extensions: 311820
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)