Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21l23
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical pr... 31 0.37
L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline acetylt... 28 4.5
L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline acetylt... 28 4.5
AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal chol... 28 4.5
Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical p... 27 6.0
Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical p... 27 6.0
Z82053-9|CAJ85768.1| 189|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z82053-8|CAB61018.2| 309|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z81483-6|CAE53731.1| 277|Caenorhabditis elegans Hypothetical pr... 27 7.9
U58734-4|AAB52501.1| 274|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF070968-1|AAD15926.1| 309|Caenorhabditis elegans PAR-6 protein. 27 7.9
>U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical
protein T05E8.1 protein.
Length = 893
Score = 31.5 bits (68), Expect = 0.37
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 50 KRKIGDSSSDDNQPKRERVESGEDQQ 127
K K GDSSSDD+ P+R+R E D +
Sbjct: 13 KFKRGDSSSDDSGPERDRDEDDSDNE 38
>L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 399 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 271
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
>L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 399 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 271
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
>AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal choline
acetyltransferaseprotein 1, isoform b protein.
Length = 627
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 399 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 271
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
>Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 14 PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 121
PQ+ A+ ++GD ++ + PK+ R+E+G++
Sbjct: 99 PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134
>Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 14 PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 121
PQ+ A+ ++GD ++ + PK+ R+E+G++
Sbjct: 99 PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134
>Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 14 PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 121
PQ+ A+ ++GD ++ + PK+ R+E+G++
Sbjct: 99 PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134
>Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 14 PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 121
PQ+ A+ ++GD ++ + PK+ R+E+G++
Sbjct: 99 PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134
>Z82053-9|CAJ85768.1| 189|Caenorhabditis elegans Hypothetical
protein T26E3.3b protein.
Length = 189
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 365 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKP 481
+L + D + I+ ++PAN + T + GP QG P
Sbjct: 106 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 144
>Z82053-8|CAB61018.2| 309|Caenorhabditis elegans Hypothetical
protein T26E3.3a protein.
Length = 309
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 365 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKP 481
+L + D + I+ ++PAN + T + GP QG P
Sbjct: 226 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 264
>Z81483-6|CAE53731.1| 277|Caenorhabditis elegans Hypothetical
protein C43D7.9 protein.
Length = 277
Score = 27.1 bits (57), Expect = 7.9
Identities = 26/95 (27%), Positives = 44/95 (46%)
Frame = -2
Query: 504 KSENQNPQGLPCTLGPMVYVVLPLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNSFFKN 325
KS+N + Q + LG + L + I+L SS S LF S+ +
Sbjct: 101 KSDNHDWQSIHKALGGLNCSRASLEVQSQNIWLQRIVNQFSSGSLDLF--FSKSTWYHPI 158
Query: 324 LPSKQLQFSIEKLPRFTLIAICSCHNIFVNSRGSN 220
L + +LQ ++ RFT + SC ++ +NS+ S+
Sbjct: 159 LSAHRLQLNL--CFRFTGFSCVSCEHLRINSKMSS 191
>U58734-4|AAB52501.1| 274|Caenorhabditis elegans Hypothetical
protein T27A10.2 protein.
Length = 274
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 354 ASRQNSFFKNLPSKQLQFSIEKLPRFTLIAICSCHN 247
A R+ N QL FS+ PRFT + SC N
Sbjct: 188 AIRETKALLNPSICQLYFSLRSFPRFTGFMLPSCKN 223
>AF070968-1|AAD15926.1| 309|Caenorhabditis elegans PAR-6 protein.
Length = 309
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 365 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKP 481
+L + D + I+ ++PAN + T + GP QG P
Sbjct: 226 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,807
Number of Sequences: 27780
Number of extensions: 267890
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -