Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21l18
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 99 3e-22
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 44 2e-05
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 42 5e-05
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 42 5e-05
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 41 1e-04
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 37 0.002
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 32 0.076
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 31 0.13
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 31 0.13
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 31 0.17
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 30 0.23
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 30 0.31
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 30 0.31
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 29 0.71
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 29 0.71
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 27 2.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 3.8
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 5.0
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.0
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.6
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 8.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 8.7
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 99 bits (238), Expect = 3e-22
Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Frame = +2
Query: 92 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDTW-GNFK 268
+ + ++W + Y D+E+ ++ K Q+++LT V PERQKV+ KG L+DD G+
Sbjct: 2 IPIAIRWQGKKY-DLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVG 60
Query: 269 LTNNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATVQ 448
+ NA +L+MG+ E A P+ VE E + P GLINLGNTCYMN+TVQ
Sbjct: 61 IKPNATLLMMGTAGELPTAMPIPAVESVEQ----EESEDDGYPSGLINLGNTCYMNSTVQ 116
Query: 449 CLKTVPELRNALLNYDKS 502
L+ +PEL +A+ ++ S
Sbjct: 117 MLRAIPELSDAVSQFNSS 134
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 308 EEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCLKTVPELRNALL 487
+ED P + F E+ E M GL+NLGNTC+MN+ +Q + P L LL
Sbjct: 95 DEDPAFIPPARILFPEEKLSMEWDNIMPNAPGLVNLGNTCFMNSVLQLMTQTPPLVQYLL 154
Query: 488 N 490
+
Sbjct: 155 S 155
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 42.3 bits (95), Expect = 5e-05
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +2
Query: 380 TAMDMPEGLINLGNTCYMNATVQCLKTVPELRNALLNYDKS 502
+++D P GL N GN CY+N+ +Q + LRNA+L+ D++
Sbjct: 608 SSLDTPIGLENTGNLCYLNSLIQYYFIIKPLRNAILDIDEN 648
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 42.3 bits (95), Expect = 5e-05
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = +2
Query: 395 PEGLINLGNTCYMNATVQCL-----KTVPEL--RNALLNYDKSSTGGDTAGELTAA 541
P GL NLGNTCYMN +QCL T+P L R L N + + G T G++T+A
Sbjct: 71 PIGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLG-TGGKITSA 125
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 401 GLINLGNTCYMNATVQCLKTVPELRN 478
GL NLGNTCYMN+ +QCL ELR+
Sbjct: 312 GLSNLGNTCYMNSALQCLTHTRELRD 337
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 401 GLINLGNTCYMNATVQCLKTVPELRNALL--NYDK 499
GL NLGN+CYMN+ +QC+ EL L +Y+K
Sbjct: 280 GLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEK 314
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 31.9 bits (69), Expect = 0.076
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 83 MPNVSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD 250
M N+S+ +K + V V+++ + K I + ++ ERQ+++ G L+D+
Sbjct: 1 MTNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDE 56
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 401 GLINLGNTCYMNATVQCLKTVPELRNALLN 490
GL NLGN+CY+ +T+Q L ++ E LN
Sbjct: 301 GLKNLGNSCYLASTMQSLFSIKEFAIHELN 330
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 401 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAGELTAALSETVSAL 565
G+ NLG TC+M+ +Q + P +RN + +ST +T A+ + S++
Sbjct: 146 GIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFSSI 200
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 30.7 bits (66), Expect = 0.17
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 395 PEGLINLGNTCYMNATVQCL 454
P G IN GN C+MN+ +Q L
Sbjct: 132 PRGFINTGNICFMNSILQAL 151
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 380 TAMDMPEGLINLGNTCYMNATVQCLKTVPELRNALLNY 493
T D GL N GNTCY+++ + L + R++L +Y
Sbjct: 35 TLTDRFYGLTNYGNTCYVSSVLVSLYHLKPFRDSLNSY 72
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 239 LRDDTWGNFKLTNNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAELATAMDMPE 400
+ D+ W NF N LV + + ++EDM+E E+ A ++PE
Sbjct: 631 INDEKWQNF--VNKTLVETRNRDNQLLGGLEPSMVGYLEDMDEGEMLDANNLPE 682
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 29.9 bits (64), Expect = 0.31
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 163 YRFIVCIHLHIWVHFLAPFYLH*NVRHFGLFC 68
Y I C H H+ V YL+ + +HF FC
Sbjct: 157 YAHIYCSHFHVMVAMELESYLNTSFKHFVFFC 188
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 28.7 bits (61), Expect = 0.71
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 401 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGG 514
GL N G TCYMN+ +Q L + R + S G
Sbjct: 214 GLKNQGATCYMNSLLQSLYIIHAFRRIVYQIPTDSPQG 251
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.7 bits (61), Expect = 0.71
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 401 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKS 502
GL NLG TC+ N+T+Q L L + + + S
Sbjct: 209 GLKNLGATCFFNSTLQVLCACEALHDVISPFQYS 242
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 401 GLINLGNTCYMNATVQCL 454
GL N G TCYMN+ +Q L
Sbjct: 231 GLKNQGATCYMNSLLQSL 248
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 336 STGAAGTSSSLLPMTSTKALFVNLKLPHVSSRNVTPLQTT 217
ST + GTSSS LP TST + +P + + TP+ T
Sbjct: 321 STSSTGTSSSPLPSTSTSCT-TSTSIP-PTGNSTTPVTPT 358
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 336 STGAAGTSSSLLPMTSTKALFVNLKLPHVSSRNVTPLQTTFCLSGWTPVSANIC 175
ST + GTSSS L TST + +P + T S TP++ C
Sbjct: 375 STSSTGTSSSPLLSTSTSCT-TSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNC 427
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -3
Query: 336 STGAAGTSSSLLPMTSTKALFVNLKLPHVSSRNVTPLQTTFCLSGWTPVSANICALN 166
S+ ++ +SSS P +S+ + +S+ VTP ++ S P S ALN
Sbjct: 222 SSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALN 278
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 398 EGLINL-GNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAGELTAALS 547
+GL N+ GN C++N +Q L + L L SST T EL L+
Sbjct: 49 KGLYNVSGNDCFLNCVLQSLASQESLLEILKLRCSSSTLYATLYELLQKLN 99
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 365 EAELATAM-DMPEGLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAG 526
E++++TA+ + L GN N C+ T+P L N + KS GG G
Sbjct: 147 ESDISTALKSYLQSLCENGN----NLVKTCIDTIPILDNKVSEILKSEAGGQILG 197
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 342 HVLSKT*MKLNWLQPWICQRVSSTWVTL 425
HV ++ +K L P C+++S WV L
Sbjct: 401 HVTYRSLLKAYCLLPSTCEQISQAWVNL 428
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 208 LWLDPCQCKYLRLEQYRFIVCIHLHIW 128
L LD CK + Q F +C+H H+W
Sbjct: 2062 LSLDQIPCKQCGVHQ-DFDLCLHEHLW 2087
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 299 GSKEEDVPAAPVEQTRFVEDMNEAELATAMD 391
G P APV+ + +ED+N+ + MD
Sbjct: 488 GYYSSGAPGAPVQPQKPIEDLNKIPINQGMD 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,388
Number of Sequences: 5004
Number of extensions: 46926
Number of successful extensions: 147
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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