Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21l15
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 31 0.097
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 31 0.17
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 29 0.39
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 0.90
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 1.6
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 2.7
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 2.7
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 3.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 3.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 3.6
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 26 4.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 4.8
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 4.8
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.4
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 25 8.4
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 31.5 bits (68), Expect = 0.097
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -1
Query: 314 REAIFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLISACLKSTCS*ANHNKY 144
RE I +A SS+ + Y FS+ + + +LN+ KI ++ ACL C N ++Y
Sbjct: 752 REGIIYATSSDDT----YTFSRSIYVKAMRDLLNEAKIQIMHACLIDVCL-KNRDRY 803
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 490 NNSFKIEVETFCKHFSIQEKLDKIEEFTYLPLKG 591
N+S+K ETF +++E+L I +F Y+ L+G
Sbjct: 132 NSSYKFTFETFGTRRTMKEQLSIISDFEYMQLQG 165
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 29.5 bits (63), Expect = 0.39
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Frame = +1
Query: 187 AEINSILSLFKIPIKFIEKPCLEKPYWIVELPSEDCAKKIASRSVLMKNCIELWSRAKS- 363
A + S SL K+ K I +++ V E A +++S LM +W+ S
Sbjct: 22 ATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALRLSSN--LMIGVTRVWAHQYSF 79
Query: 364 ----IDQLHINLRKSLQNTTSKWIFENVECA-EYICPKELI 471
+ LH+ +RK L + TSK F+N++ E PK+L+
Sbjct: 80 FHSQVSTLHLRVRKELDHFTSK-PFKNIDIQNEQTNPKQLL 119
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.3 bits (60), Expect = 0.90
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 292 CAKKIASRSVLMKNCIELWSRAKSIDQLHINLRKSLQNTTSK 417
C + VL+ C +W +D+L+ +L+ LQN K
Sbjct: 2257 CLSESDENDVLISRCCTMWLSNSHLDELNNSLQHYLQNLPCK 2298
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 347 GQELKVLTNYILIYANHFKIPPLNGFSKMWN 439
G V++ Y+ Y + K P + GF +MWN
Sbjct: 150 GLSAYVISYYVEKYVDKAKFPIIKGFIEMWN 180
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 563 SILSSFSWIEKCLQNVSTSILNELLGEQHTSINSL 459
+++ SF W E +++ + + LLG HT N+L
Sbjct: 28 ALMYSFLWSESAKKSLLNEVFSALLGYDHTLWNTL 62
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 400 QNTTSKWIFENVECAEYICPKELIDVCCSPNNSFKIEVETFCKHFSIQ 543
QNT + + Y CP L+DV K+++E++ K+ S++
Sbjct: 181 QNTRQLNLSKIATLIGYDCPLALVDVVTQKQIPNKMDMESWVKYMSLE 228
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 305 IFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLISACLKST 171
+F + E S+I + FSKH F ++ + I+N K ++S L T
Sbjct: 486 VFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVSLSLLFT 530
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.2 bits (55), Expect = 3.6
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Frame = +1
Query: 235 IEKPCLEKPYWIVELPSEDCAKKIASRSVLMKNCIELWSRAKSIDQLHINLRKSLQNTTS 414
IE+ CL +V L E C K++++ V W L + ++ SL+ + +
Sbjct: 1090 IERLCLHLKT-VVPL-FEQCTKEVSAEDVT-----NFWLELV-FTLLLVYIKLSLKGSIN 1141
Query: 415 KWI-FENVECAEYICPKELIDVCCSPNNSFKIEVET----FCKHFSIQEKLDK 558
I F++ + +C + L+D S NS+KI + T C+ S E D+
Sbjct: 1142 SQITFKDFQQELSLCIENLLDSFLSKTNSYKIALNTVLVRICEEASRNEHSDQ 1194
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 3.6
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +1
Query: 202 ILSLFKIPIKFIEKPCLE---KPYWIVELPSEDCAKKIASRSVLMKNCIELWSRAKSIDQ 372
+L L +P +I + L Y + DC R LM N ++ S K +DQ
Sbjct: 715 VLPLVAVPNAYIRRAALSVIYSAYQSFDDIDRDCIVTPLLRPYLMSNLCDINSLEK-LDQ 773
Query: 373 LHINL-RKSLQNTTSKWIFENVECAEYICPKE 465
+ + S+ +T ++W E+ + + C K+
Sbjct: 774 FILPMVSDSVWSTLTRWYEESENSSFWKCDKD 805
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 320 TDREAIFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLIS 189
T + + SS SST SK SM L G++ ILL++
Sbjct: 993 TSSSTSYTSSSSSSSSTTSAASSKASVSMGLNGLMIAAVILLVA 1036
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 319 VLMKNCIELWSRAKSIDQLHINLRKSLQNTTSKWIFENVECAEYICPKEL 468
V MK C+ +W R ID HI L + + N+ + P+E+
Sbjct: 902 VFMKLCVNIWERFDFIDIEHI--MPLLDHACQQISLSNITQGTVVLPEEI 949
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 427 ENVECAEYICPKELIDVCCSPNNSFKIEVETFCKH 531
E V AE +E+ + CC + F+ E+E++ +H
Sbjct: 204 ELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEH 238
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 355 LLTTILYNFSSKQTEKRSFSHNLLKGVLQ 269
+L +LY+ SK TE RS + NL+ L+
Sbjct: 515 ILPVVLYSLQSKDTEVRSRALNLILTFLE 543
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 265 WIVELPS-EDCAKKIASRSVLMKNCIELWSRAKSI 366
W V L + E+C+K + + NC ELW+ +
Sbjct: 23 WKVRLSAYEECSKSFSLSADGSDNCFELWNNQSEL 57
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 250 LEKPYWIVELPSEDCAKKIASRSVLMKNCIEL 345
LEK WI L D A K S +K+C ++
Sbjct: 1334 LEKNKWIFTLNENDIATKFDENSSPIKDCSQV 1365
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 73 IITVNRNTKISWN*CVLEVK--MWRRYLLWFAHEHVDFRHAEINSILSLFKIPIKFIEK 243
+ +N +++++N + +VK + YL WF+H V R + + LSL+ KF+E+
Sbjct: 872 LFAINNLSQLNFNEKLKDVKDNLTPAYLPWFSHYIVTQRVSREANFLSLYG---KFLEE 927
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = +2
Query: 119 YLKLKCGGDIYY-------GSLTSTLISDMLKSIVFCPYSKYPSNS 235
Y L CGGD+Y+ G L +T+ S + S S PS+S
Sbjct: 102 YGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSSTTSSSSSSSPSSS 147
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 427 ENVECAEYICPKELIDVCCSPNNSFKIEVETF 522
+++ A Y P EL+D S +N F +++TF
Sbjct: 488 QHIGTATYAAP-ELLDAMSSQHNKFTKKIDTF 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,883
Number of Sequences: 5004
Number of extensions: 54159
Number of successful extensions: 169
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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