Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21l15
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607...    54   9e-08
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570     30   1.2  
08_02_0464 - 17463066-17465136,17470821-17471650                       29   3.7  
03_05_0092 - 20714102-20717902                                         29   3.7  
10_01_0181 - 2041502-2043013                                           28   6.5  
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561...    28   6.5  
01_06_1730 + 39494738-39495853                                         28   6.5  

>02_04_0224 -
           21059328-21059888,21060388-21060462,21060715-21060798,
           21060866-21061183,21061511-21061722,21061766-21062030
          Length = 504

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
 Frame = +1

Query: 133 MWRRYLLWFAHEHVDFRHAEINSILSLFKIP-------IKFIEKPCLEKPYWIVELPSED 291
           MW  YL  F H  +D+R  E+ S+  LF  P        +  E   ++ P+ +V LP ++
Sbjct: 1   MW--YLCVFYHRLLDYRRPEVQSLAELFGGPGAGDAVEWRMPENHHVDSPFHLVRLPGDE 58

Query: 292 -CAKKIASRSVLMK--NCIELWSRAKSIDQLHINLRKSLQNTTSKWI-FENVECAEYICP 459
             A +IA+RS        I   S AK +  L   L K +     +   +E +E      P
Sbjct: 59  RLAAQIANRSKSASPDRLIHHHSLAKLL--LAGLLVKGIYELWGQGTTYEELERVVMAYP 116

Query: 460 KELIDVCCSPNNSFKIEVETFCKHFSIQEKLDKIEEFTYLPLKG 591
           +E      +P ++FKI V++F K  S QE+ D ++  TY+P KG
Sbjct: 117 EERKLPYLTPESTFKIVVDSFGKVISFQEQNDIMKSLTYIPFKG 160


>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
          Length = 508

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +1

Query: 325 MKNCIELWSRAKSI-DQLHINLRKSLQNTTSKWIFENVECAEYICPKELIDVCCSPNNSF 501
           +K+   LWS    +  + H+   KS + T   W + +    E    +  + V   P N +
Sbjct: 279 LKHQTHLWSLLAQLKSREHLAQCKSCKQTNGHWKYYDGNLFEEQILQTDLQVDTYPENDY 338

Query: 502 KIEVETFCKHFSIQEKLDKIEEF 570
           + E + F +HF         EE+
Sbjct: 339 QAEEDEFGRHFDTDSNYYDAEEY 361


>08_02_0464 - 17463066-17465136,17470821-17471650
          Length = 966

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 199 SILSLFKIPIKFIEK----PCLEKPYWIVELPSEDCAKKIASRSVLMKNCIELW 348
           SILS   IP+ F+      PCL + +W+     + C K IA    L +  +++W
Sbjct: 732 SILSARPIPVDFLASLSPPPCLLQRFWMWNSYFQRCPKWIAPLDRLTELKLDVW 785


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -1

Query: 419 HLEVVF*SDLRKLICNWSILLALDHNSIQFFIKTDREAIFFAQSSEGSSTIQY 261
           HL ++  ++L KLI + S+ ++    S Q F++  R  IFFA  S     I++
Sbjct: 587 HLTIMT-NNLSKLINDLSLKISHSSGSDQHFLQRIRTIIFFADFSNSDEFIEF 638


>10_01_0181 - 2041502-2043013
          Length = 503

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 113 NVYLKLKCGGDIYYGSLTSTLISDMLKSIVFCPYSKYPSNS-LRNRVWR 256
           N +LK+     I+   + S L+SD++   +    SKY  NS L+N++ R
Sbjct: 16  NTHLKIVQATPIFMDVVISALVSDIISRFMSFLISKYGHNSCLKNKLER 64


>07_03_0413 +
           17854787-17854847,17855362-17855606,17856127-17856189,
           17856276-17856294,17856547-17856645,17856725-17856802,
           17856891-17857135,17857796-17857952,17858161-17858303
          Length = 369

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 286 EDCAKKIASRSVLMKNCIELWSR-AKSIDQLHINLRKSLQNTTS-KWI-FENVECAEYI 453
           E+ AKK A +S  + N IE W +   S D   + +  ++Q   S K +    V CA+Y+
Sbjct: 101 EEAAKKTADKSKTILNNIERWQKGVASTDVFGVPIEATVQREQSGKAVPLVLVRCADYL 159


>01_06_1730 + 39494738-39495853
          Length = 371

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 133 MWRRYLLWFAHEHVDFRHAEINSILSLFKIPIKFIEK 243
           +W  Y  W  H HV   H E +     FK  +++I +
Sbjct: 42  LWDLYERWQEHHHVPRHHGEKHRRFGAFKDNVRYIHE 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,163
Number of Sequences: 37544
Number of extensions: 277817
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)