Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21l15
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-17|AAF36002.2|  432|Caenorhabditis elegans Hypothetical...    52   2e-07
Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    28   4.4  
Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical pr...    28   5.8  
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF077544-4|ABD94098.1|  348|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF077544-3|AAK39242.3|  458|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AC024200-17|AAF36002.2|  432|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.1 protein.
          Length = 432

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 30/77 (38%), Positives = 43/77 (55%)
 Frame = +1

Query: 148 LLWFAHEHVDFRHAEINSILSLFKIPIKFIEKPCLEKPYWIVELPSEDCAKKIASRSVLM 327
           L+ F+  HVDFR AE  +I S+F I +   EK       +IV   S    +K+ SRS+L+
Sbjct: 5   LVIFSQSHVDFRIAEFEAICSMFSIKVDLSEKLNTTDHMFIVNFESHLEVRKLLSRSILV 64

Query: 328 KNCIELWSRAKSIDQLH 378
           K  IEL   A+S D ++
Sbjct: 65  KYAIELSIEAESYDIMY 81


>Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical
           protein T05C12.11 protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +1

Query: 490 NNSFKIEVETFCKHFSIQEKLDKIEEFTYLPLKGS 594
           NN+F+I+ E F     IQEKL ++ E+  +P+KG+
Sbjct: 22  NNNFEIKKEYFQTDV-IQEKLIRVNEWHDIPVKGT 55


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 264 LDCRTPFRR--LCEKDRFSVCFDEKLYRIVVKS*K 362
           LDC   F R   C++ R+  C D  + R +V+S K
Sbjct: 44  LDCEVNFERRMACKRCRYQKCIDNNMQRYLVQSKK 78


>Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical
           protein ZK856.9 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 NVYLKLKCGGDIYYGSLTSTLISDMLKSIVFCPYSK 220
           NVY+++    + YYG +T + I +M ++ V   + K
Sbjct: 296 NVYMEVHANPERYYGIITDSTILEMTRTRVVADFPK 331


>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
           protein C50C3.2 protein.
          Length = 2107

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 403 NTTSKWIFENVECAEYICPKE 465
           +TTS+W+ E + CA+ I PKE
Sbjct: 793 STTSEWLREKMICADTIEPKE 813


>AF077544-4|ABD94098.1|  348|Caenorhabditis elegans Hypothetical
           protein H22K11.4b protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 263 YGFSKHGFSMNLMGILNKDKILLISA 186
           YG+S+HGFS+ L  I+    IL + A
Sbjct: 180 YGYSEHGFSIVLFAIILGVSILFVFA 205


>AF077544-3|AAK39242.3|  458|Caenorhabditis elegans Hypothetical
           protein H22K11.4a protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 263 YGFSKHGFSMNLMGILNKDKILLISA 186
           YG+S+HGFS+ L  I+    IL + A
Sbjct: 290 YGYSEHGFSIVLFAIILGVSILFVFA 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,259
Number of Sequences: 27780
Number of extensions: 291737
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)