Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21l11
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z77134-7|CAJ90503.1|  121|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z77134-6|CAB00872.2|  135|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical...    27   9.7  
AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine sy...    27   9.7  

>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 143 LCSEGFEFDPNVKDCVPISDYGCTAN 66
           L  + F F+P+ + C P   YGC+ N
Sbjct: 377 LTIQRFYFNPSTQKCQPFHYYGCSGN 402


>AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical
           protein K11D12.6 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 128 FEFDPNVKDCVPISDYGCTANQ 63
           + +DP VK C+P    GC  N+
Sbjct: 38  YHYDPTVKRCLPFGYTGCGGNE 59


>Z77134-7|CAJ90503.1|  121|Caenorhabditis elegans Hypothetical
           protein R09H10.3b protein.
          Length = 121

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 385 FIETVYNFSDHTMERYHPYQRAPWNASIFK 474
           ++E V+N  D T   + P   +PW  S ++
Sbjct: 90  YVEVVFNIRDATQHYHVPLTLSPWGYSTYR 119


>Z77134-6|CAB00872.2|  135|Caenorhabditis elegans Hypothetical
           protein R09H10.3a protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 385 FIETVYNFSDHTMERYHPYQRAPWNASIFK 474
           ++E V+N  D T   + P   +PW  S ++
Sbjct: 104 YVEVVFNIRDATQHYHVPLTLSPWGYSTYR 133


>AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical
           protein Y46G5A.19 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 176 MCVGINH-RLELLCSEGFEFDPNVKD 102
           M  G +H +L+L C +GFEF  N K+
Sbjct: 155 MSCGFSHPKLDLFCGDGFEFLKNHKN 180


>AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine
           synthase protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 176 MCVGINH-RLELLCSEGFEFDPNVKD 102
           M  G +H +L+L C +GFEF  N K+
Sbjct: 155 MSCGFSHPKLDLFCGDGFEFLKNHKN 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,779,258
Number of Sequences: 27780
Number of extensions: 169367
Number of successful extensions: 467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)