Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21l04
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0961 + 8070992-8071015,8071016-8071089,8073051-8073200,807...    31   0.66 
05_05_0013 - 21509307-21509493,21509762-21510123                       30   1.5  
07_02_0017 + 11816603-11816677,11816869-11817026,11817121-11817217     28   8.1  

>07_01_0961 +
           8070992-8071015,8071016-8071089,8073051-8073200,
           8073307-8073592,8074077-8074220,8074357-8074665
          Length = 328

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 170 INRCRYNRKVWFILKSFYSIVSFLFDVKNVYEIFGFSLQQCIIYGLQLLATVGCSV 337
           I RC+     + ILK    +++F+   K  YE   FS+ Q  +Y + ++ T+  S+
Sbjct: 86  IRRCKQGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQSYLY-ITIIYTISYSM 140


>05_05_0013 - 21509307-21509493,21509762-21510123
          Length = 182

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 694 SVGRSPTKWTDDLVPXAGSRWMGKAEDRIMWKAL 593
           S+G SP+ W    VP   SR   KAED++   AL
Sbjct: 7   SMGGSPSSWGVAEVPVPSSRPWSKAEDKVFESAL 40


>07_02_0017 + 11816603-11816677,11816869-11817026,11817121-11817217
          Length = 109

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 137 VSKRRFVVQGSINRCRYNRKVWFILKSFYSIVSFLFDVKNVYEIFGFSLQQCIIYGLQLL 316
           +S    V+ G+++    N   WF+LK  + +++F F    +  +  FS    II  + LL
Sbjct: 9   ISSAEAVLVGALSS-GVNAPTWFVLKITFLLLAFCFTA--MLSLAFFSSDFMIIAHVLLL 65

Query: 317 ATVG 328
            T+G
Sbjct: 66  VTIG 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,274
Number of Sequences: 37544
Number of extensions: 279361
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)