Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21l04
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 233 SFLFDVKNVYEIFGFSLQQCIIYGLQLLATVGC 331
           SFL DV    ++   S    + YG++   T+ C
Sbjct: 129 SFLHDVTERNKLVRLSGDGSVTYGMRFTTTLAC 161


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 483 NSMYRNNYYRAFTNNSRPFRILFPKMMVN*GHNKVP 376
           N+ Y NNY   + NN   ++ L+   ++N     VP
Sbjct: 98  NNNYNNNYNNNYNNN---YKKLYKNYIINIEQIPVP 130


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 483 NSMYRNNYYRAFTNNSRPFRILFPKMMVN*GHNKVP 376
           N+ Y NNY   + NN   ++ L+   ++N     VP
Sbjct: 98  NNNYNNNYNNNYNNN---YKKLYKNYIINIEQIPVP 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,363
Number of Sequences: 438
Number of extensions: 3576
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)