Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21k24
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   0.50 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   2.6  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.6  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    24   4.6  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    24   4.6  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   4.6  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   6.1  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    24   6.1  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    23   8.1  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    23   8.1  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    23   8.1  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    23   8.1  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -2

Query: 312 FFFPYSLFYYKTLASRYPPAQSSASSNKRLAFFSI-ISSLHFLHAATLLQPLVEYSASQE 136
           F  P SLF      +  P ++SS+  +K+ +  S  + S   L   T   PL+   + + 
Sbjct: 39  FMDPVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQES 98

Query: 135 LHWSMKFTKVTSA 97
            HW+++   + SA
Sbjct: 99  SHWTIRHESMPSA 111



 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 312 FFFPYSLFYYKTLAS 268
           FF+PYS FY+  L+S
Sbjct: 612 FFWPYSQFYFCILSS 626


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 272 HHGILQPSHQHHQTKDLHSSP 210
           H G+L P HQH     + +SP
Sbjct: 16  HPGLLTPDHQHAAILSVQNSP 36


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 53  LWIFYSFLPP*ILRIAEVTLVN 118
           L +FY+F+PP       VTL+N
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLIN 298


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 91  QNSRG*KTIENPQ*TN*ASNHADHFQF 11
           ++S+G   IENP   N + NH+D+  F
Sbjct: 31  RDSQGQLGIENPPKCNNSGNHSDNLGF 57


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 101 EVTLVNFMDQCSS*EAEYSTNGCNRVAAC 187
           EV   N MD+C +  +E    GC+ +  C
Sbjct: 259 EVICENLMDRCIASNSESCGIGCDNMTIC 287


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 220 ILLHYQQSSFFACSYPVTTISRIFCLSGTAL 128
           +L +  Q+  F CS  +T     FCLSG+ +
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQI 119


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 196 KTADNGEECKSFV 234
           K A+NG +C+SFV
Sbjct: 238 KVAENGADCRSFV 250


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 309 FFPYSLFYYKTLASRYP 259
           FFPYSL  +K L   YP
Sbjct: 317 FFPYSLIGHKELRFVYP 333


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 116 NFMDQCSS*EAEYSTNGCNRVAAC 187
           N MD C + + E +  GC+ +  C
Sbjct: 261 NLMDNCIASDTETTGLGCDNMTVC 284


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 296 HCFI--TKL*HHGILQPSHQHHQTKDLHS 216
           HC I  T+   HGI  P + H Q  D HS
Sbjct: 80  HCAISHTRWATHGIPSPINCHPQRSDPHS 108


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 312 FFFPYSLFYYKTLAS 268
           FF+PY+ F++ TL S
Sbjct: 537 FFWPYAGFHFSTLVS 551


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 204 SSLHFLHAATLLQPLVEYSASQELHW 127
           S  H LHA TL    VEY+  + L W
Sbjct: 239 SIFHVLHAFTLFDTTVEYNI-EPLLW 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,977
Number of Sequences: 5004
Number of extensions: 24679
Number of successful extensions: 59
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)