Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21k24
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.28 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.65 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.65 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.65 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.65 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.65 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   0.65 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.65 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.65 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   2.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   6.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   6.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 302 HIHCFITKL*HHGILQPSHQHHQTKDLHSSPLSAVFI 192
           H H   T   HH      H  H T   HSS  +A+ I
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQI 459



 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+  D H        +F   LPC
Sbjct: 319 HHRNADTHEMSEWVKVVFLYWLPC 342


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+T D +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+T D +  P     +F   LPC
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPC 373


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 HHQTKDLHSSPLSAVFIFCMQLPC 171
           HH+T D +  P     +F   LPC
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPC 373


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 192 FLHAATLLQPLVEYSASQELHWSMKFT 112
           FLH  T    LV  S    + + M+FT
Sbjct: 130 FLHDVTERNKLVRLSGDGSVTYGMRFT 156


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 186 HAATLLQPLVEYSAS 142
           H   +++PL+E+SA+
Sbjct: 4   HLKNIMKPLMEFSAT 18


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -1

Query: 184 CSYPVTTISRIFCLSGTALVHEVYQSDFSYSQNS 83
           C +PV  +  +      ALV  +Y  + +  Q S
Sbjct: 66  CKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRS 99


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 248 HQHHQTKDL 222
           H HHQT+ L
Sbjct: 353 HHHHQTQSL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,413
Number of Sequences: 438
Number of extensions: 1717
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)