Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21k18
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   5.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   5.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   5.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    20   9.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   9.7  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 208 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 128
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 108 TAPACQTICGTG*RTTTATINHV*TCVIYVAVVFTF 1
           T     T   TG R++   I++V    IY+ + F F
Sbjct: 279 TTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVF 314


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +1

Query: 10  NYSYINYTSLNMVYRRRRRSSTGATY 87
           NY Y NY + N  Y     ++    Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +1

Query: 10  NYSYINYTSLNMVYRRRRRSSTGATY 87
           NY Y NY + N  Y     ++    Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNY 113


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 100 GVSNHMWHRLKNDDGDDKP 44
           G+S   WH+ +   G  KP
Sbjct: 2   GISRDHWHKRRATGGKRKP 20


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 13  YSYINYTSLNMVYRRRRR 66
           YS  N+T + +V+  RRR
Sbjct: 195 YSTGNFTCIQIVFNLRRR 212


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 10  NYSYINYTSLNMVY 51
           NY+Y NY + N  Y
Sbjct: 88  NYNYSNYNNYNNNY 101


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 122 IPAEERRRRVKPYVAPVEE 66
           +P  + RRRV+  +  VEE
Sbjct: 401 LPGNDARRRVEAALEAVEE 419


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 277 NEAISSPALVWLSTV 321
           + AIS PA+VW   V
Sbjct: 174 SSAISFPAIVWWRAV 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,861
Number of Sequences: 438
Number of extensions: 2146
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)