Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21k16
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.17 |||transcriptional coactivator, multiprotein bridging ... 128 7e-31
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 33 0.036
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 29 0.45
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 27 2.4
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 4.2
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 4.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.6
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 9.6
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 9.6
>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 128 bits (309), Expect = 7e-31
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Frame = +3
Query: 105 MSDWDTVTIL--RKKP-PKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTA 275
MSDWDTVT + R P + KT+ +N+ARR G V T++KY G Q ++
Sbjct: 1 MSDWDTVTKIGSRAGPGARTHVAKTQSQINSARRAGAIVGTEKKYATGNKSQDPAGQHLT 60
Query: 276 KLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNI 455
K+DRE E + + I +GRQAKG +QKDL+ +I EKPQ+VNDYE+GR IPN
Sbjct: 61 KIDRENEVKPPSTTGRSVAQAIQKGRQAKGWAQKDLSQRINEKPQVVNDYESGRAIPNQQ 120
Query: 456 VLGKIERAIGIKLRGK 503
VL K+ERA+GIKLRG+
Sbjct: 121 VLSKMERALGIKLRGQ 136
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 33.1 bits (72), Expect = 0.036
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 132 LRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTN-KQHVTTKNTAKLDRETEELRH 308
+ K K K +A N R+G+P +++ G N T+ NT D + +LR
Sbjct: 439 MSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRL 498
Query: 309 EKIPL 323
EKI L
Sbjct: 499 EKILL 503
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 29.5 bits (63), Expect = 0.45
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 108 SDWDTVTILR-KKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 284
++W + + + + ASA K A + QG+PVDTQ++ A V K D
Sbjct: 147 ANWSALAVAQFLRGEYASAYKIVDAFESTINQGVPVDTQEESEAMLFMNLVILKKDGVED 206
Query: 285 RETEELRHEKIPLD 326
L EK LD
Sbjct: 207 AYKHLLSIEKKVLD 220
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 511 ANHCSLLADRNNGIPWEAKTLLRFIY 588
AN CS+ A +N + W+ T RF Y
Sbjct: 57 ANFCSISATDDNALRWDKITYHRFAY 82
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 506 FFSTKFYSNCPFNFSKNNVIWNATTS 429
F T+ SNC F F + V WN+ S
Sbjct: 203 FIVTQSESNCKFRFDFSKVYWNSRLS 228
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 488 YSNCPFNFSKNNVIWNATTSFI 423
Y C F+FSK+ +W F+
Sbjct: 157 YQTCKFHFSKSQCVWTLYLEFL 178
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 133 RIVTVSQSDMLNVDHWYDKTKQEYYYW 53
RI V+Q+ ++ H DKT EY W
Sbjct: 738 RIAYVAQAAFTHLGHHPDKTPSEYIQW 764
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 139 LRRIVTVSQSDMLNVDHWYDKTKQEYYYWF 50
+++I+ S M ++ WY+ K++Y++ F
Sbjct: 4508 VQKILPCSAGQMYALNAWYNTEKKKYFHTF 4537
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 455 NVIWNATTSFIIIYNL 408
NV+W+ TTSFI I+ +
Sbjct: 357 NVLWSMTTSFINIWRI 372
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 258 TTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKD 380
T K+ K T + E D+GK+I G+ ++QK+
Sbjct: 281 TAKDPVKALTSTNNVEEEDPAEDIGKIIASGQTRAYLAQKE 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,628
Number of Sequences: 5004
Number of extensions: 47842
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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