Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21k15
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81038-9|CAB02765.1| 189|Caenorhabditis elegans Hypothetical pr... 122 2e-28
AL032652-10|CAA21708.2| 92|Caenorhabditis elegans Hypothetical... 36 0.021
Z36753-4|CAA85333.1| 163|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL132952-7|CAB61139.2| 670|Caenorhabditis elegans Hypothetical ... 28 4.2
AL132862-27|CAB60564.1| 682|Caenorhabditis elegans Hypothetical... 28 5.6
AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical ... 28 5.6
U88182-5|AAB42306.1| 237|Caenorhabditis elegans Hypothetical pr... 27 9.8
U58763-1|AAK68877.2| 559|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z81038-9|CAB02765.1| 189|Caenorhabditis elegans Hypothetical
protein C25A1.13 protein.
Length = 189
Score = 122 bits (294), Expect = 2e-28
Identities = 62/158 (39%), Positives = 90/158 (56%)
Frame = +2
Query: 71 SAFVRAPLKNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKP 250
S F++ P NG+ RY QL RI +FCK + +S G+R+FIE LV+ + NP VV+Y +P
Sbjct: 27 SDFLKIPAYNGISRYTNQLHRITVRFCKQSESSVGVRNFIENQLVEIGRKNPSVVIYAQP 86
Query: 251 RRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQYTNHPSV 430
R+ P I EY NG L ++ N T +E+ K V L ++ G +L Q PS+
Sbjct: 87 VRNSNPSIRAEYGNGRTLQINAKNMTQDEVSKDVHLLFSRSGEP-VVKLESRQSALVPSI 145
Query: 431 QGPWTPFTFKDPELNTAELPDVRFGSNNRLPATATEQL 544
QG WTP T+ E+NT +LP +F + +ATE +
Sbjct: 146 QGQWTPITWLPTEMNTEQLPAKQFSKHKSTATSATEYI 183
>AL032652-10|CAA21708.2| 92|Caenorhabditis elegans Hypothetical
protein Y63D3A.7 protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +2
Query: 125 LQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDRL 304
L+ I C+ + AS G+R FIE D V K NP + ++ P + Y +G
Sbjct: 10 LREIRIHVCQKSPASAGVRAFIENDYVGIKKANPQFPILIREASGIVPRVFARYEHGVER 69
Query: 305 WMSVHNKTHEEIVKWVELFRTQQ 373
++ + + E + + +Q+
Sbjct: 70 VATLEDLSRENVKSTITQLASQK 92
>Z36753-4|CAA85333.1| 163|Caenorhabditis elegans Hypothetical
protein T09A5.5 protein.
Length = 163
Score = 29.1 bits (62), Expect = 2.4
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%)
Frame = +2
Query: 110 RYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYL-KPRRHRGPVIVGEY 286
R+V + + ++ + G+ F+E+ L ++NP V +L + P +VGEY
Sbjct: 13 RFVPHFVALRLSWTHNDLKAEGLEQFVEECLPAIRENNPQVKYFLQRSYTTCDPFVVGEY 72
Query: 287 LNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQYTNHPSVQGPWTPFTFKDP 466
V+ K+ E+++ +E G ++ ++ P Q W T
Sbjct: 73 SWLRHRKKRVNWKSKEQVLSMIE--EMSIGGDYREGYKRGVNRRLPRGQELWDTETMGHD 130
Query: 467 ELNTAELPDVRFGSNNRLPATATEQLRLMFEK 562
+ + LP TA + K
Sbjct: 131 VFHVTSKWKADIPEEDELPITAKTHPNFTYRK 162
>AL132952-7|CAB61139.2| 670|Caenorhabditis elegans Hypothetical
protein Y51H4A.7 protein.
Length = 670
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 305 WMSVHNKTHEEIVKWVELFRTQQ 373
W+ V++K EEIV W++ +R ++
Sbjct: 284 WLDVYSKDLEEIVNWIKEYREKK 306
>AL132862-27|CAB60564.1| 682|Caenorhabditis elegans Hypothetical
protein Y73F8A.35 protein.
Length = 682
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +2
Query: 218 DNPGVVVYLKP------RRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGN 379
DNP + Y++P R H G I +L+ L HN E + K++ + ++
Sbjct: 307 DNPPIDHYMRPFQNALERPHHGEFITRNHLSPGNLTREHHNTLLEYLSKFMNAYPNEKKF 366
Query: 380 NW 385
+W
Sbjct: 367 SW 368
>AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical
protein Y67D8C.2 protein.
Length = 460
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 346 MGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVHVQGPRIEHGRTTRREI 501
+G +P+ R+ L LETP HE L T+ +V Q + +T E+
Sbjct: 57 VGTCMPDIFRKPLILETPTAITHELTLQWTTVSNVEEQKVMVTDENSTMSEV 108
>U88182-5|AAB42306.1| 237|Caenorhabditis elegans Hypothetical
protein C53C11.1 protein.
Length = 237
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 236 VYLKPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELF 361
VYL P + R P G Y D ++ + T E++++WV F
Sbjct: 129 VYLTPEQRRIP---GRYFTPDDGSLAWRSWTQEQVLEWVSKF 167
>U58763-1|AAK68877.2| 559|Caenorhabditis elegans Hypothetical
protein F10C5.2 protein.
Length = 559
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 376 ALLSSEQFDPFYDLLVGFVVDAHPQSVPVQIFP-NYDR 266
ALL S Q +PF D +VG V P + V I+ NY R
Sbjct: 103 ALLRSHQLNPFNDTIVG-VSTTEPYEISVLIWKVNYFR 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,272
Number of Sequences: 27780
Number of extensions: 326782
Number of successful extensions: 974
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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