Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21k08
         (639 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069128-1|AAL39273.1|  582|Drosophila melanogaster GH13807p pro...    29   4.0  
AL035245-2|CAA22836.1| 1464|Drosophila melanogaster EG:133E12.2 ...    29   4.0  
AE014297-1820|AAF55037.2|  582|Drosophila melanogaster CG31322-P...    29   4.0  
M30114-3|AAA28753.1| 1176|Drosophila melanogaster biological clo...    28   9.3  
M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clo...    28   9.3  
M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clo...    28   9.3  
L07825-1|AAA28769.1|  560|Drosophila melanogaster period protein...    28   9.3  
L07823-1|AAA28771.1|  560|Drosophila melanogaster period protein...    28   9.3  
L07821-1|AAA28773.1|  560|Drosophila melanogaster period protein...    28   9.3  
L07819-1|AAA28775.1|  560|Drosophila melanogaster period protein...    28   9.3  
L07818-1|AAA28776.1|  560|Drosophila melanogaster period protein...    28   9.3  
L07817-1|AAA28777.1|  559|Drosophila melanogaster period protein...    28   9.3  
AY575847-1|AAS89667.1|  605|Drosophila melanogaster biological c...    28   9.3  
AL024485-6|CAA19680.1| 1055|Drosophila melanogaster EG:155E2.4,F...    28   9.3  
AL024485-5|CAA19679.1| 1116|Drosophila melanogaster EG:155E2.4,F...    28   9.3  
AL024485-4|CAA19678.1| 1212|Drosophila melanogaster EG:155E2.4,F...    28   9.3  
AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock...    28   9.3  
AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA ...    28   9.3  

>AY069128-1|AAL39273.1|  582|Drosophila melanogaster GH13807p
           protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 598 NSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLNVIRANKQCGSVQNLHHIH 422
           N +S   +K  N  +I    S EH A  LR L  +   + ++++ +++C S    +H H
Sbjct: 375 NLLSRASAKSLNPGQIYPSPSAEHLADLLRSLDVAKRLQDSLLQLSERCESHYECNHFH 433


>AL035245-2|CAA22836.1| 1464|Drosophila melanogaster EG:133E12.2
           protein.
          Length = 1464

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = -3

Query: 637 TSRVQPNYRTAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLNVIRANK 458
           TS  +   RT+  +S+SS  S  ++ S      S    A      P+SS +        K
Sbjct: 136 TSSTRAAARTSSTSSLSSSSSSSSSTSSSTSSASPTAGASSTATCPASSSSSSGNGSGGK 195

Query: 457 QCGSVQNLH-HIHSKY*ANGGPRGRRDGASR 368
             GS++  H  IHS   A      +R G+SR
Sbjct: 196 S-GSIKQEHTEIHSSSSAVSAAGPQRGGSSR 225


>AE014297-1820|AAF55037.2|  582|Drosophila melanogaster CG31322-PA
           protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 598 NSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLNVIRANKQCGSVQNLHHIH 422
           N +S   +K  N  +I    S EH A  LR L  +   + ++++ +++C S    +H H
Sbjct: 375 NLLSRASAKSLNPGQIYPSPSAEHLADLLRSLDVAKRLQDSLLQLSERCESHYECNHFH 433


>M30114-3|AAA28753.1| 1176|Drosophila melanogaster biological clock
           protein C protein.
          Length = 1176

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 18  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 69


>M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clock
           protein B protein.
          Length = 1122

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 18  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 69


>M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clock
           protein A protein.
          Length = 1218

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 18  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 69


>L07825-1|AAA28769.1|  560|Drosophila melanogaster period protein
           protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 5   SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 56


>L07823-1|AAA28771.1|  560|Drosophila melanogaster period protein
           protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 5   SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 56


>L07821-1|AAA28773.1|  560|Drosophila melanogaster period protein
           protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 5   SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 56


>L07819-1|AAA28775.1|  560|Drosophila melanogaster period protein
           protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 5   SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 56


>L07818-1|AAA28776.1|  560|Drosophila melanogaster period protein
           protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 5   SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 56


>L07817-1|AAA28777.1|  559|Drosophila melanogaster period protein
           protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 5   SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 56


>AY575847-1|AAS89667.1|  605|Drosophila melanogaster biological
           clock protein protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 14  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 65


>AL024485-6|CAA19680.1| 1055|Drosophila melanogaster
           EG:155E2.4,FBgn0003068;per protein.
          Length = 1055

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 18  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 69


>AL024485-5|CAA19679.1| 1116|Drosophila melanogaster
           EG:155E2.4,FBgn0003068;per protein.
          Length = 1116

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 18  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 69


>AL024485-4|CAA19678.1| 1212|Drosophila melanogaster
           EG:155E2.4,FBgn0003068;per protein.
          Length = 1212

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 18  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 69


>AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock
           protein protein.
          Length = 1224

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 18  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 69


>AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA
           protein.
          Length = 1218

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 610 TAYPNSISSDDSKKTNASEIKHLGSHEHAAPRLRVLPSSSLTKLN-VIRANK 458
           +AY NS S+  S+++ +S+ +  GSH   +      PS+  +  + +I+ NK
Sbjct: 18  SAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNK 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,282,548
Number of Sequences: 53049
Number of extensions: 467685
Number of successful extensions: 1110
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)