Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21k06
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 30 0.68
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 30 0.89
AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical ... 30 0.89
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenase... 28 3.6
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 27 4.8
U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeo... 27 4.8
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 27 6.3
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z37092-3|CAA85454.1| 266|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 30.3 bits (65), Expect = 0.68
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 161 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPVMQDERKMS 334
T + CK +K L S + N+D I V+F +KK I + +V+ DE
Sbjct: 33 TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92
Query: 335 KRKKKVINNNKYILFN 382
K + + +Y++ N
Sbjct: 93 KEAYEEEESREYVIEN 108
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 29.9 bits (64), Expect = 0.89
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +2
Query: 122 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNV 301
K N+ EQ TE A+ +N+KLL L + ++ MDQ + N ++K + + L
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178
Query: 302 MPVMQDERKMSKRKKKVINN 361
Q+ K K++++ I +
Sbjct: 179 --SCQNRFKQMKQERRHIED 196
>AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical
protein Y104H12D.2 protein.
Length = 327
Score = 29.9 bits (64), Expect = 0.89
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 170 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 289
AA KNE LL+ L+ SYN++ Q++ I K N NY
Sbjct: 34 AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 415 PLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 299
PLG+L VPT Q F+ N ++ HF V+ +R+Y
Sbjct: 75 PLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 293 LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSXPAMWDLVKN 451
++++P M K S K++ +Y + ++ +K KQ E + P +WD VKN
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKN 1137
>AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenases,
short chain protein9 protein.
Length = 319
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +2
Query: 254 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSXPAM 433
I F++ +N+ + N V++ E + + ++ NN Y + + +P + + P +
Sbjct: 67 IARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYV 123
Query: 434 WDLVKN 451
WD + N
Sbjct: 124 WDTINN 129
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
protein F48F5.1 protein.
Length = 1291
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 200 NKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNK 367
N LE+ KSNM +++ N EK + L + RK++++KK N +
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRADQEKSEARKIAEKKKDEQNQKE 873
>U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeobox
protein 60 protein.
Length = 272
Score = 27.5 bits (58), Expect = 4.8
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +2
Query: 116 LQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNIN-YI 292
+ K ++ +++ T + V +N + ++ + SN+ Q I+ K NI
Sbjct: 68 IMKQIQLDKDMEKALTNSEEVLRNHRDFRPIDEKDF--SNIRQSISKRFEHSKNNIRGEA 125
Query: 293 LNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSXPAMWDLVK 448
+ V++ E + RK++ + N + +W+ +Q +PS +L K
Sbjct: 126 ATKILVLRREIEQQGRKRRNFDKNTTDILQNWFHDHRQNPYPSDQEKAELAK 177
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 27.1 bits (57), Expect = 6.3
Identities = 26/88 (29%), Positives = 36/88 (40%)
Frame = +2
Query: 119 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILN 298
+KS V + ++ E EKLL K M+Q I N LE+K
Sbjct: 868 EKSEKVKVQKELEEVEKQG---REKLLEKEREFRKTMEEMEQNEEIFNVLERKYNEQHKK 924
Query: 299 VMPVMQDERKMSKRKKKVINNNKYILFN 382
VM M D + +RK + +N K L N
Sbjct: 925 VMK-MNDVLREYERKIEQLNMEKTDLEN 951
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 212 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFN 382
SSS KS + N + + + M + D+ M++ K + NN+KY++F+
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIFH 184
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 212 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFN 382
SSS KS + N + + + M + D+ M++ K + NN+KY++F+
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIFH 184
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 212 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFN 382
SSS KS + N + + + M + D+ M++ K + NN+KY++F+
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIFH 184
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 212 SSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFN 382
SSS KS + N + + + M + D+ M++ K + NN+KY++F+
Sbjct: 128 SSSVEKSKYPLNDLVRNQFVESDEEDVAEEMRTVWDDASMARIKTILENNHKYVIFH 184
>Z37092-3|CAA85454.1| 266|Caenorhabditis elegans Hypothetical
protein F44F4.3 protein.
Length = 266
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 134 VNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLE 271
V + E Q E +++CK E +K+E + ++ M + + F E
Sbjct: 70 VTLEEIQGKRELSSICKMEAYTSKIEDKTKQRNYMATITRQLKFSE 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,207
Number of Sequences: 27780
Number of extensions: 229385
Number of successful extensions: 675
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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