Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21k04
(375 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 29 0.18
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 29 0.24
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 2.2
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 2.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 2.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 2.9
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 3.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 9.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 9.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 24 9.0
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 29.5 bits (63), Expect = 0.18
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 339 VSRDIRTTTEARRPGTARNTRRPKPTELSV 250
V+R +RT+T RRP T R+PK SV
Sbjct: 21 VARKVRTSTTFRRPKTLELARKPKYARKSV 50
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 29.1 bits (62), Expect = 0.24
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 339 VSRDIRTTTEARRPGTARNTRRPKPTELSV 250
V++ +RT+T RRP T + +R+PK SV
Sbjct: 21 VAKKVRTSTTFRRPKTLQLSRKPKYARKSV 50
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 2.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 312 EARRPGTARNTRRPKPTELSVCCRERSETPRHRN 211
EA PG RNTR+ ++S+ ++ET +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.4 bits (53), Expect = 2.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 325 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 227
++HH+GP +H+E+ + E L+ A D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 2.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 288 RNTRRPKPTELSVCC--RERSETPRHRNKPSRPVWSRRSPHH 169
RN + K T SV R + R N P P W+ R+ HH
Sbjct: 866 RNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 2.9
Identities = 20/65 (30%), Positives = 26/65 (40%)
Frame = +1
Query: 178 TPSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 357
TPS P S +P + A+P + T S P + G P V A G+ PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488
Query: 358 GVTGG 372
T G
Sbjct: 489 TGTPG 493
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 347 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQR 228
A+P +G + PGA+ Q T R + ++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.8 bits (49), Expect = 9.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 371 PPVTPPGGAEP*AGTSGPPQRPGAQAQRE 285
PP PP G EP PP PG +R+
Sbjct: 10 PPPPPPPGFEP-PSQPPPPPPPGYVKKRK 37
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.8 bits (49), Expect = 9.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -1
Query: 294 TARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFH 163
T+ + P SV R +S+ RH S S+ HH H
Sbjct: 1268 TSSSMASAAPARTSVS-RSKSKAERHETSTSSRKSSKSGEHHHH 1310
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 23.8 bits (49), Expect = 9.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 317 PQRPGAQAQRETLGVRSRQS*AFAAGSAQRRP 222
P +P + +TLG +R S A AGS P
Sbjct: 296 PYKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,199
Number of Sequences: 5004
Number of extensions: 28401
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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