Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21k02
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41279-2|AAK31425.2|  145|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -1

Query: 79  IIFLNYLTSVYIFNLARNPIKLFVFL 2
           I+F+ ++TS++IF++ +  I L +FL
Sbjct: 98  IMFIFFMTSIFIFHILQQTIHLLLFL 123


>U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical
           protein F47E1.4 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 136 CSALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARN 26
           CS   S H   + H++   + F++ L+ +Y++  A N
Sbjct: 671 CSIYDSDHLRIWMHLLYVGVRFISLLSDIYVWKNAGN 707


>U41279-2|AAK31425.2|  145|Caenorhabditis elegans Hypothetical
           protein C17C3.9 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 210 NVIASDNGTRPCNIKANNFNKLLCNVV 130
           + I  +  T PC IK  N  + LCNVV
Sbjct: 84  STIPDEYRTHPCVIKFQNCIRALCNVV 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,645,793
Number of Sequences: 27780
Number of extensions: 91839
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)