Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21j23
(493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35663-1|CAA84725.1| 324|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr... 28 3.2
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 28 3.2
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 28 3.2
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 28 3.2
U58754-6|AAK72081.1| 325|Caenorhabditis elegans Serpentine rece... 28 3.2
U64847-2|AAN84826.1| 62|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical pr... 27 9.8
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 27 9.8
AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z35663-1|CAA84725.1| 324|Caenorhabditis elegans Hypothetical
protein T04A8.1 protein.
Length = 324
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -1
Query: 355 VKLIKLEKHTLCRGIVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLTAQTARSIRL 176
+ ++ L TLC +V I+F+A I L + R + +++ + T SI++
Sbjct: 201 ISILHLFHFTLCFVLVIIFFVATILGLTMLKQRIKSAERSLTIVTMIMAVQTVTFASIQI 260
>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical
protein R09E10.5 protein.
Length = 1459
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 254 PENTAYSYVSDGCIDFNSSDCPFYPLNVL*FGTIRSRRCFNTFIVVSAIT 105
P+N + VS G I + + PFY +N++ FG N ++ S +T
Sbjct: 61 PQNPTINQVSPGQIFSGTGNNPFYGVNLVPFGPEAGDLMVNPSMLTSGMT 110
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -1
Query: 337 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 203
EK TLC I+ TI+F+ + + S T+P + + MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -1
Query: 337 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 203
EK TLC I+ TI+F+ + + S T+P + + MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -1
Query: 337 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 203
EK TLC I+ TI+F+ + + S T+P + + MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334
>U58754-6|AAK72081.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 12 protein.
Length = 325
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 300 YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 413
++VT ++ +CFS+L + I +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210
>U64847-2|AAN84826.1| 62|Caenorhabditis elegans Hypothetical
protein F08F3.10 protein.
Length = 62
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -3
Query: 149 SRRCFNTFIVVSAITHS*MFSCSNSGKLVKITRPFNGPLSVLNELFTA 6
SR + T IV+ I H+ +F+C+N L K R + L +LNE+ +A
Sbjct: 4 SRVAWFTLIVI--IFHT-LFACTNLYLLAKFHRFLDEKLMILNEILSA 48
>Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical
protein VT23B5.2 protein.
Length = 931
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 272 KEHCNNCNEIYCYNSTAQR 328
K HC NC +I+C ST R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -3
Query: 284 YNVPLFVVNCPENTAYSYVSDGC-IDFNSSDCPFY 183
YN F CP YS + D C + N CP Y
Sbjct: 709 YNRKTFKFPCPSGLYYSRLQDKCDVKENVEGCPEY 743
>AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical
protein VT23B5.2 protein.
Length = 931
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 272 KEHCNNCNEIYCYNSTAQR 328
K HC NC +I+C ST R
Sbjct: 882 KHHCRNCGQIFC--STCSR 898
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,171,066
Number of Sequences: 27780
Number of extensions: 211055
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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